FastQCFastQC Report
Sat 31 Dec 2022
SRR5843424.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843424.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33770
Sequences flagged as poor quality0
Sequence length46
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCAGCAAGAAGGTGACGGGCCGCCTCATGTTGGCTGTGGGAGGA500.14806040864672787No Hit
CTCCCCGGGTCCAGTGGATTTTTTTAACTATTATTCAAAAGCAAAA470.1391767841279242No Hit
CACAACGGGGGTTCCCGTTAAAGGGGAACACCGGGAGCCTCCCACT470.1391767841279242No Hit
TGATTTGGGGGCCTGTGGAAGACTGGGAGAGGAGACACTAAGTGCT400.11844832691738229No Hit
ATGGCTGGGGGGGCGATTTGGTCAAGGCACGGGTCGACCTGTTCCC390.11548711874444773No Hit
TTACAAGGGGAGAGGGACGAAGCCGAACCTCTGAACCGCCGCCAGG390.11548711874444773No Hit
AATTATGGGGGGTGGTCAAAGAAGTACGAATTTGGAGAATCTGACC390.11548711874444773No Hit
TTCTTAGGGGGCGGCTCGGAGGATGAGCTGGTGGCGGTGGCTGCAG360.10660349422564407No Hit
CTCCCCCGGTGTTTACCCAGGAGGAGAGGTACAAGATGGTACAGGC360.10660349422564407No Hit
CATAATGGGGGCCAGTAAGTGGTGTGGAGATTACGAAGGGACATAC360.10660349422564407No Hit
GGTACTGGGCACAGGGCCGTGCTCTGTCGGACTGTACGGATTGTTC360.10660349422564407No Hit
AACTGGGGGGATTCTGGGAGAGGAAAATGGCAGCGGCTAGGTTGAG360.10660349422564407No Hit
GAATTTGGGACTATGTGACCATCATTGATGCCCCAGGACACAGAGA350.1036422860527095No Hit
GCGCAGGGGGCTTTTCAGTCGGGCGCTGAGTGGGTTTTCGGATCAT350.1036422860527095No Hit
GTAACAGGGCTTTCTCTCCTGTAGCAAGCCTACCTTCACTCTCAGA350.1036422860527095No Hit
TACTCTGGGGCTGGACAGGGAATCCTGGACGTGGAGATCGTGAGTC350.1036422860527095No Hit
AACTGGGGGAAGCGGGCTGAGCTGCAAGACTAGGTGACAGCCTGCC350.1036422860527095No Hit
CTCCTCGGGCTTGCTGCTAACCTTTCCCGAGTGATTGCTTTTCATG340.10068107787977496No Hit
AAATTAGGGAGGAGCTGGTGCTGGGTGGAGGACGCGGTGGTCGGGC340.10068107787977496No Hit
CTGCACGGGAGTCTAGTGGAGTAGTGCAGCACCTATGCCTTTCTGA340.10068107787977496No Hit

[OK]Adapter Content

Adapter graph