FastQCFastQC Report
Sat 31 Dec 2022
SRR5843423.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843423.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32370
Sequences flagged as poor quality0
Sequence length46
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCCGGGTCCAGTGGATTTTTTTAACTATTATTCAAAAGCAAAA540.16682113067655235No Hit
TTTATTGGGAGACACTGGAATGGAAGGGAGCTGGTGTGGCCTGATT400.1235712079085573No Hit
GCACCTGGTCCTTCGCCTCAGAGGTGGCATGCAGATCTTTGTGAAG390.12048192771084339No Hit
CAGCAGCAAGAAGGTGACGGGCCGCCTCATGTTGGCTGTGGGAGGA380.11739264751312944No Hit
TGCCACCGGGGACCATCAGCTAGAACCAAAGGCCAGAAAAAAGATG360.11121408711770157No Hit
TAGTCCGGGGTGTTTGGCTTAGACTCCATCATGGGCAATGCAGACT360.11121408711770157No Hit
GTTAAAGGGCAGTGCTCCCATTGTCCCCTGCCTCCTCTGTAATTTT350.10812480691998765No Hit
AATTAGGGGAGACGCGCGAGCGCAGGCAAGCGGCTGCAGATTGCGG350.10812480691998765No Hit
AGTCCCGGCATTCCTCCATGTGATTGACAGCCAGACCTCTGGGTTC350.10812480691998765No Hit
GTAGACGGGGTTTGTTCAAGGAATTTTTGTTGAAAAATATGATCCT350.10812480691998765No Hit
TTCATAGGGGGCCGACACAGGGCAGCGCTGACGGGCACGGGGGCTG340.10503552672227372No Hit
CACTACGGGGTGAGTGTTTGGGAAGGGCAGCATAGGCCGAGGTTGC340.10503552672227372No Hit
AGTTTAGGGGAGTGCGGAGCCGGAGGCGAGCGTGTCCAGTCCCAAG340.10503552672227372No Hit
TCAACCGGGGGGAGGGCCGAATCTAGCTCCGGGAACGCTAGAGCGC330.10194624652455977No Hit
TTCTTAGGGGGCGGCTCGGAGGATGAGCTGGTGGCGGTGGCTGCAG330.10194624652455977No Hit
GAGCTGGGCTGGCAAGGAAAGGTTGGGGTGTGCTGGCTGAAGGAGA330.10194624652455977No Hit
AATTATGGGGGGTGGTCAAAGAAGTACGAATTTGGAGAATCTGACC330.10194624652455977No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)