FastQCFastQC Report
Sat 31 Dec 2022
SRR5843421.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843421.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20631
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCGTGGGGGGACTCCTGCAGGAATGGAGTACCTTGCTCATACTG320.1551063932916485No Hit
AAGACAGGGATCTCCTCCAATTGGTGAGGGAAATCTCACCATCTTA300.14541224371092046No Hit
TACCCTGGGGCTTTTTCGCAACGGGTTTGCCGTCAGAACGCAGGTG290.14056516892055645No Hit
TTTGGTGGGGTCTCTGCGCTGATGCCAGAATGTATGGTGTTCTCCC270.13087101933982842No Hit
ATTAGAGGGGGACCAGTTCCTTGTGAAGACGGGGACCATCACTACC270.13087101933982842No Hit
CGCCTAGGGATATAAAACAAGACAAAGAGGCATGGAGTTGAGATTC260.1260239445494644No Hit
TTTCATGGGACACACTCCGCCGCCGGCTTACACTGCGCTTCTTGCC260.1260239445494644No Hit
CACTCAGGGAGAGAGAAAAAGTAAAGGACAGAAGAAGGAGACTGGA250.12117686975910039No Hit
CTTCTAGGGAGAGGAAGATGGCGCCTCGAAGAGAGAGGGTCTCTAC250.12117686975910039No Hit
CACTGGGGGACAGGGAATTCACAACATGAAGGCTGTTGCTGTTGCT250.12117686975910039No Hit
TTTAAGGGGGCGCTGCAGCCCGGAGCTGCGGTCACCGCCGGGTCTC250.12117686975910039No Hit
GTGCGCGGGGCTTTTTCGCAACGGGTTTGCCGTCAGAACGCAGGTG250.12117686975910039No Hit
ACACATGGGACTGCAGGACCGCTAGACGGACGACAACTTCTGCTCT240.11632979496873637No Hit
ATTAAGGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG240.11632979496873637No Hit
ATCCCTGAGGATGTAATGCCAGTCGTGTTAATGCTGTGGGAAGGGA240.11632979496873637No Hit
ATCAGTGGGGAGTACTCCCGGTGGGGCGCTGGCCAGTCATGGCGGA240.11632979496873637No Hit
TTCCAAGGGGAGATGCCAACATGGCAGCGGTTGGGGTTGGTGGATC240.11632979496873637No Hit
ATTAAAGGGGATGCCAACCCAGCAGCCAGCTGCGCCGACGAGTCTC240.11632979496873637No Hit
CGTCAAGGGCTTTTCTCTCTTTCCCCGGCCTGGCTTCCCGGCGCGG240.11632979496873637No Hit
TCTGATGGGACAGCGTGGAGGACCAACTCCCAGGCACTCGGCCTGG240.11632979496873637No Hit
CGTCAGGGGGAGGCGGAAGTGCGGGCGGAGGATCCCGAGCCGGATC230.11148272017837235No Hit
TTCGTAGGGGAGCGGAACTGGGGCTATTAGGGAGCCTGCAGGTCTT230.11148272017837235No Hit
AATAGGGGAGAGACAGCCCCTCCCTCTGCTGTCCTCTCGGCCTCTG230.11148272017837235No Hit
ACTGTCGGGGAGGCCGGAAACCGCGCTGCACTGAGCCGCTGCTGCT230.11148272017837235No Hit
TGCTAAGGGGGGGCCGGGCTTTGGATTCGCGCGCCGGCCCTGGCTA230.11148272017837235No Hit
GTCCTCTTTGCTTCTGGACAGAACTTGGCCCGTCATCTGATGGAGT230.11148272017837235No Hit
TGCCAGGGGGGGGCTTCTTGGAGGAAGGGACATGCAGCCGGAGGAC230.11148272017837235No Hit
TATAGGGGCGCGGGCAGGGCGCTGAGGATCGGGCGCCCCTCGGCCG230.11148272017837235No Hit
AACAGTGGGATTCGAGACCAGCAAATACTATGTGACCATCATTGAT230.11148272017837235No Hit
GTACTTGGGAGGACGGTTCAGATGAGCCTGGCACAGCTGCTTGTCC230.11148272017837235No Hit
CATCTAGGGGGCCTTTGCATCCGGAGACGCGGGCTGTTCGCGTGGT230.11148272017837235No Hit
CCACATGGAGCTGTCTCTAGCTTCTTAGCAGAGTGGAAGTTCTCAG230.11148272017837235No Hit
CCTTTAAAGGAGACGATTACAATGAGGAGAATCCAACCGAACCCAG230.11148272017837235No Hit
AGCAAAGGGGAGAAGTTTAAGGAGTTAGTGCTCTGTGGAAGTGCCT220.10663564538800833No Hit
TACCGGGGAGGCCCAGGCACTCACTGAAAGCTGAGGCTATGATGGC220.10663564538800833No Hit
ACTAATGGGATGCCATCTACCTTCTTCAACCTCACCATAGCCTTCT220.10663564538800833No Hit
ACGAATGGGGTGCCTTCGCTACATTAGAAGAGGAGGCTTGTACAGA220.10663564538800833No Hit
CTGCTGGGGTCTCGTCTTCAACAGCATTATTTTCTGCTGGTTCTCA220.10663564538800833No Hit
TTCGCCGGGTTATCTTAGTTCCAGAACTGAGTCTTCCTTTGGAGTA220.10663564538800833No Hit
TTTCTCGGGGGAGAGGAAAAGTGAGCTGTGCTGTGGCTCCCGCGGC220.10663564538800833No Hit
TAGGTGGGAGAGAGAAAAAGTAAAGGACAGAAGAAGGAGACTGGAG210.10178857059764432No Hit
TAATTTGGGCACTCGTGCCTCTGGGATCAGATTGATACCCTGGAGC210.10178857059764432No Hit
CATTGAGGGGACAAGGGAAGTGATCGTCGCCGGAGTCAGATCGTCT210.10178857059764432No Hit
ACTTCCGGAAGCTAGCTGCGGCCTGAACAGTAGTGCTGGTGATTGC210.10178857059764432No Hit
TATAATGGGAGTCATGGCGGAGCCTTGGGCCGGGCAGTTTCTGCAA210.10178857059764432No Hit
AAGGGCGGGGGGTTGGGTCGGAGTAGAGCGGGCGCAGGATGGACGA210.10178857059764432No Hit
ATCACAGGGGGGGACTTCTCTCCGGCCCTGATCCCTTTGAACCCTT210.10178857059764432No Hit
GCTCTAGGGTGAGCAGTGATTCTGCAACGTATCCCGATGTGGAGTA210.10178857059764432No Hit
TTTCAAGGGGGTCGCAGCGGCCACTCGGAGCTCTCGGTACAGTGCA210.10178857059764432No Hit
AGCGCAGGGAGCCGAGGAGGCCCCGCGCAGTGCTGCCAACGCCCCG210.10178857059764432No Hit
TGGAACGGGGAAATTGTTCAGTTCTTCTCAGGGTTGGAAATCGTGC210.10178857059764432No Hit
TTGCAAGGGTGCTGTCAGACCGACAGGTGGGTGCTTTCCATGGAGA210.10178857059764432No Hit
CATACTGGGGAGTCGGCTCTAGTGGTCTCGTAACGAAGAGTTGTTC210.10178857059764432No Hit
ACTTAAGGGACGTCCACCAATGACTGGGTGGTGACCTGCAGCTACA210.10178857059764432No Hit
CAGTGGGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG210.10178857059764432No Hit
AGACTAGGGCTCCGCAGCCTGCTGTCCGCCTGCCTTTTCGTCTCTA210.10178857059764432No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)