FastQCFastQC Report
Sat 31 Dec 2022
SRR5843418.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843418.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61778
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGGGAGCATCCAGAACCTACCGACTGCGGCTGGAGGCTGCC850.13758943313153552No Hit
ACTTACGGGATCCCCACTGATGCTTATGTAAACCTCCTTGTGCGCT690.11169024571854058No Hit
CTCTGCGGGGACTGCTACTGATCTGAGTGCAAAACCATCCCTCGCT670.10845284729191622No Hit
CTCCCCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC670.10845284729191622No Hit
CAGCCAGGGATGAACTGTGGGTCCTGCCAAGGTTCTCAAAGCACTT660.10683414807860403No Hit
CGTTCCGGGGAATCTATTTATCTTAAGTAGGAACTGCCTCGAGCAG650.10521544886529186No Hit
ACTTTGGGGAACCCAGTGGCTAACCAGTGTCAGAGATCTAAGCAGG650.10521544886529186No Hit
CACCACGGGATAGAGATTCTGAACAGGTACATCTATTTCTATGAAA640.10359674965197967No Hit
TGTTGAGGGCTTACTGAAGTGCCTGAATTCACAGCTGAAGTCTTAG630.10197805043866749No Hit
GTACGAGCGGATTGGCCAATGGTCATGACCTGGCTGCGGCCATGGC630.10197805043866749No Hit
GTTCATGGGGGGGTGGGTAGCATGGCCAACCAGGCCAGTAGAGATT620.1003593512253553No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)