FastQCFastQC Report
Sat 31 Dec 2022
SRR5843417.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843417.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58791
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGGGAGCATCCAGAACCTACCGACTGCGGCTGGAGGCTGCC680.1156639621710806No Hit
CGTTCCGGGGAATCTATTTATCTTAAGTAGGAACTGCCTCGAGCAG670.11396302155091767No Hit
TACCGAGGGGTATTCTGACTCTTTGGAAACCAGGCCCTGCTTTTGC660.11226208093075471No Hit
TACGAGGGGGATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAG660.11226208093075471No Hit
GAATGTGGGGGGAATTCACTGTCCTTTCATCCATAAGCGGAGAAAG640.10886019969042882No Hit
TTTCCAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA640.10886019969042882No Hit
TTGCCTGGGCACAGCCAAGGGGACAGCGCAGCTGGCGAGGGCACTG620.10545831845010291No Hit
TGTTGAGGGCTTACTGAAGTGCCTGAATTCACAGCTGAAGTCTTAG610.10375737782993995No Hit
TTCGCTGGGATTGTCTTGGTGGGTGGTTCTACCAGAATCCCCAAGA610.10375737782993995No Hit
GTATTTGGGGTTTCGCTGTGAGGCACCTGCCAAGAACATCGCCACC590.10035549658961407No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)