FastQCFastQC Report
Sat 31 Dec 2022
SRR5843400.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843400.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34153
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACTTAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA720.2108160337305654No Hit
CGTCCAGGGATTCCATACAACCATTGACATTGGCGTTAAGTATGCA550.16104002576640414No Hit
GTAGCTGGGATGACTACATAGAGCTCTTTGATGGCTACGACAGCAC550.16104002576640414No Hit
ATGAGGGATTTCCTGGTATTTTGGGACATTTGCACGCATGGAGACA550.16104002576640414No Hit
TCTGCAGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTG520.15225602436096392No Hit
TGTGCTGGCTGAAGGAGAGAAAGGAGAGAAAGGAGAGAAAGGAAAG520.15225602436096392No Hit
CTTTTGGGGAACCTGCAGGGTGGCGATGACCTGGACCCCAACTACG520.15225602436096392No Hit
ATTGCCGGGGGATTGTGTGAACGAGGTGATTGGCATCAGGCAGCTC520.15225602436096392No Hit
CATTGAGGATTTCAAGCCCTCAGATGGGAGCGAGAATGAGATGGAG510.14932802389248384No Hit
TGACTTGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT500.14640002342400377No Hit
AAAGCAGGGGGTGGTTGTGATGACTGCCATGAGTCTCCTGGTGCTT490.1434720229555237No Hit
TCAACCGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG490.1434720229555237No Hit
GCACCGGGATTCTTTGGGCACCCAGAAGTTTATATTCTTATCCTCC480.14054402248704362No Hit
AACTATGGGGGCTGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGG480.14054402248704362No Hit
CACTGCGGGACCATGGGCTTTTGCTCCGGCCGCTGCACGCTTCTTG470.13761602201856354No Hit
GTTTCTGGGGAGAAGGTATGCAGCAATGACAACAAGACCTTCGACT470.13761602201856354No Hit
TATCTAGGGATTGTTACATTGTTCACTTTTAGTGCTGGTGTCTGTT470.13761602201856354No Hit
GTTTAGGGGGGCCTCGTAAGCTCCCAGGGCCCACCTCTCTTCCCCC460.13468802155008347No Hit
TGACCCGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG460.13468802155008347No Hit
ACACCTGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG460.13468802155008347No Hit
GCTTCCGGGCGGACAGTCTGTGGTCACTGCCAATGACGTCAGCGAT460.13468802155008347No Hit
CTACACGGGGCTTCAAGGCTCCACCATGTTCTCGCGGGCGAGCGTT450.1317600210816034No Hit
TTATAGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG450.1317600210816034No Hit
TCAAACGGGAATGTCCAACCTGTCTGACCAGCCAGGGTCCTTCTGA450.1317600210816034No Hit
TCTACCGGGAGGAGGTCTGACAGCTCGGGTCCTCTGGAGCACAAGG450.1317600210816034No Hit
TTCGCTGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAAC450.1317600210816034No Hit
ATTAGCGGGAGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTT440.1288320206131233No Hit
GTTCATGGGATTCAATGCAGAGGCCTAATTGAAGACACGAAAGTAA440.1288320206131233No Hit
TTTCTGGGGCGATCTAACAGCGGGAGAAGCAAGGATACTGGTGATG440.1288320206131233No Hit
AGGTTGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC440.1288320206131233No Hit
ACTACAGGGACGTCTGTAGTCCCTGTCCTCCCTTCTGTCCTACCCC440.1288320206131233No Hit
TTGTAAGGGGATCTAGCACTGGGCTGTTTCAAGGGTTTGAGCTGCT430.12590402014464322No Hit
AAAAACGGGACACACTGAGGTTCCTGTGTTTGGAAATCCGAAGATG430.12590402014464322No Hit
TTCCCAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT430.12590402014464322No Hit
TCTCTAGGGGGGGCAGGGACTCCGCAGTCAGCGTCATGGCTGCCCG430.12590402014464322No Hit
GCCATAGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG430.12590402014464322No Hit
ACTAATGGGGAGGCAGGGCGGAGGCGCAGTCTGCACCATGGCGTAT430.12590402014464322No Hit
GATTATGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA430.12590402014464322No Hit
TATACAGGGGGAAGTCCGGATTTTCAGCCGGCGCGTGAAGGTGCGG420.12297601967616315No Hit
CAATATGGGGAAGCGCCGCGGAGGGTCAATTTCAGTCATGCAGGTT420.12297601967616315No Hit
GGATATGGGGGGCGGAGGCAGGTCACCAATCCTGCACGGGGCCCCA420.12297601967616315No Hit
TGTTTTGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG420.12297601967616315No Hit
ATAAGCGGGAGAAAAGCAGAGGCCTGAGCAGGCCAGGCCAGCCCTC420.12297601967616315No Hit
TGTGTGGGGGGGACGCGATGAGGACCTGGGCTTGCCTGCTGCTCCT420.12297601967616315No Hit
ATTGCGGGGACAGGAATCATCACCCAGGGGGCCCGTGACTTTGGCC420.12297601967616315No Hit
ATGAGTGGGGGAAGAGTTAAGTGCTTGCAGCGGTACTGGCTGTGGC420.12297601967616315No Hit
CTTCGTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA420.12297601967616315No Hit
ATGCTAGGCACGCTGCTCGAACAGTGATACGCACACTGATAACTAT420.12297601967616315No Hit
AGCACGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTG420.12297601967616315No Hit
ACACACCTTAGACGCTTCATGATCTAACAACTTACTATGGTTGGCA420.12297601967616315No Hit
GGAATTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA410.12004801920768307No Hit
TTTGCAGGGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCAT410.12004801920768307No Hit
ATTAGTGGGCCAACGTGCTGTGTCTGTCCAAGTCCCCCAATAAGCA410.12004801920768307No Hit
GCGACTGGGGATGCCCACCTTCCGTTGGGAGGAGATTCAGAAGCAC410.12004801920768307No Hit
CTGATTGGGCGGACCTGCGGCTTTGACTTTGGGGGCAACATCATCA410.12004801920768307No Hit
CGCTTGGGGTTTCTCCAGCAGCCGAGCAAGATGCCCAAAGGGAAGA410.12004801920768307No Hit
GTCAGCGGGGGGAATTCAGATGCCTGGATAGGTTCAAGTTACGTTT410.12004801920768307No Hit
TTAGTCGGGTTGACAGGTAAATGGATGCGCTAACTGGCGCACGCCT410.12004801920768307No Hit
TGAAACGGCAGCCCGTAGCCCGTCGGTTCCGGAGTAAGTTCCAGGT400.117120018739203No Hit
TGCCACGGGGGGGAATTCGAGCTCTTTCGACGTTTTGAAGGAGGGT400.117120018739203No Hit
TGCTTAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA400.117120018739203No Hit
ACGCTAGGGGTAAGAACAAGCCATACCCAAAGTCTCGTTTCTGCCG400.117120018739203No Hit
ATCGAAGGGGGACAGGGAGCTGGAGCCTTGGTTCACTCAGAGTGAG400.117120018739203No Hit
AGTCGGGAGTGACTGGGGTCTCCCATTCCCACCCTTGCACATTCAC400.117120018739203No Hit
AGCAAAGGGAAGTGGCTCAGTTTCCCCTGCGGATGAGAGACTGGCT400.117120018739203No Hit
CTTCCAGGGGGGAATTCCAGCAGCGATTAAGGCAGAGGCGTTTGTA400.117120018739203No Hit
GCATCAGGGATGAGTGGGACGTTGCTGAAGCCCGCAAGATCTGGTG400.117120018739203No Hit
GTCTTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACTT400.117120018739203No Hit
CTGACAACCCCATGCCCCTACCAGCTCTGTGCTTTGCCCCGCTAAG400.117120018739203No Hit
AGTGAAGGGGAATTGCGAAGATGAAGGCTCTGTGGGCCGTGCTGTT400.117120018739203No Hit
AGTCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC390.11419201827072292No Hit
TAGCATGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG390.11419201827072292No Hit
TGCACTGGGGGAGGTCACACGGTGCCTTGGCCCGGTCGTCCTTCCC390.11419201827072292No Hit
AGCTGCGGGGGGGCACCGAAGCTTTCAGCTTTGGGGGTCATTCTAC390.11419201827072292No Hit
AGTGGTGGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTAT390.11419201827072292No Hit
GTAAAAGGGCCGATCTAGCACTGGGGGGAATTCGAGCTCTTTCGAC390.11419201827072292No Hit
ACGCCTGGGGATCTATAGGAGGGTCTCTATACCTACTTCACCATGC390.11419201827072292No Hit
CTGCCAGGGATGCACAGACCTGGTCAATCTTTGGCTGATTGAAAGA390.11419201827072292No Hit
TCTACTGGACGGTCCTGTGCAAGCTGATAAACAGTTTATATCCACC390.11419201827072292No Hit
GTGCGAGGGGGGTTTTTTGAATCTCTTGTCATTCTCATCCAGAAGT390.11419201827072292No Hit
TTGCTTGGGCGTTTTTAGGATATTGTGAGTAATATAGATTGGCGCT390.11419201827072292No Hit
CTTTCAGGGGGCAGAGGCCTGGGCGACTCTTTTGAATGGAATCGGG390.11419201827072292No Hit
CATAGTGGGATCACCTCCGCCTGGAAGCTGAAGTGGAGGTGGTAGA390.11419201827072292No Hit
GCTTAAGGGTCCCCCGAGTGTTCTTTGGCTCACTAACACCTCTAAG380.11126401780224285No Hit
AGCTCAGGAGTCACAGAAGGTCCAGCTATCTCAACCCCACACTCTT380.11126401780224285No Hit
GTTATAGGGACCTCTCTGGGACCCTTTATCACCTCAGACTTAGGAT380.11126401780224285No Hit
AGCAATGGGGGGGGTGACCTGCGTGTTTCCCATTGACCTTGCCAAG380.11126401780224285No Hit
TGTAGTGGGGTGCAAGGAGAGGCCTCAACCTCCAAGCGCCTGTCCT380.11126401780224285No Hit
TTAAATGGGATTCTTACATAGTGACAGTTATAGTAAGGCTGGCACC380.11126401780224285No Hit
CTTTGTGGGGCGCGCCATCTTGGCTACTCCGTGAGGGTCGAGCGTC380.11126401780224285No Hit
CAATGCGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT380.11126401780224285No Hit
GGGAACGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG380.11126401780224285No Hit
ATTTACGGGGACAGCGGTGTCATCTGTCTAGGTAGCGGCTTCACCG380.11126401780224285No Hit
GAGCCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC380.11126401780224285No Hit
GTACTTGGGACAGTAGAATGGAGGGCAGAATTACTGGGACACAATC380.11126401780224285No Hit
TCTTCAGGGATCCCACAAAGTAGAGTTGTGTTGGTCTCTGGACCCT380.11126401780224285No Hit
GTAATCGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT380.11126401780224285No Hit
CAAAATGGGGACTCCCTCCTCCCTTCACAGGTCCCCTGGGGCTTTG380.11126401780224285No Hit
TGGCAGACAGGGATGCCACAACTAGATACATCAACATGATTTATCA380.11126401780224285No Hit
ATAATAGGGGCATCAGTAGACCTAACAATTTTCTCCCTTCATTTAG380.11126401780224285No Hit
TGTGCTGGGAGATGAGAAGGAAGATTCTTACTTCTCCGAGATCCGA380.11126401780224285No Hit
GGTGCTGGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAA380.11126401780224285No Hit
TGCAATGGGGGTCTCTTTCCTGGTTCCCAACCGCGCCAGGTGACTC380.11126401780224285No Hit
ACTTAAGGGAAATAAGAGGGTTAAGGTTATGGGAGGGGGCATAGAC380.11126401780224285No Hit
CACTTCGGGGGCCGCCATGGTGGCGTCTGTGCCGCTGCGGAATGTC380.11126401780224285No Hit
GTCCAGGGAGACAACCATTCGTGTGGTGTCCATGGACAGAGACTAC380.11126401780224285No Hit
ACGCACGGGAGACAGACGCAGAGCTGGGAAAAGGGAGGCTGTGGAG380.11126401780224285No Hit
CATTTCGGGAGAGCGGAGAATGGGAGTAGAGCAGAGTGTCTGAACA370.10833601733376277No Hit
CGCAGTGGGATTCAACAGGTGACATTCCCACTGTGACCCTAAACAG370.10833601733376277No Hit
AAGAGTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT370.10833601733376277No Hit
CGAAATGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG370.10833601733376277No Hit
AGTATGGGGGGGGGCTCCGTGGCCTGCGTGTGTTCTCCGGCTACTT370.10833601733376277No Hit
ATGCGAGGGACCCGGCTGGTGTCTCTTCCTTTTATAGTCAGCAGCA370.10833601733376277No Hit
GTGCCTGGGATCTTGCTCTGGGGGGAATTCGAGCTCTTTCGACGTT370.10833601733376277No Hit
TTTAGCGGGGGGTCCGAGCGAGCGCGTCCTTGCTTCAAAGAGATAG370.10833601733376277No Hit
CCCAAAAGGGAGAGGCGGTGGACAGCGAGCGGGCATGAGCGCGTCC370.10833601733376277No Hit
TCACACGGGGAAACTAAGTCCTCTTTCAATGGCTTTTAAATTATTC370.10833601733376277No Hit
TAACGTGGGGGGCGCCCAGCGCGCCCAGCGTCTCGGTAGCCAGAGG370.10833601733376277No Hit
CTATTAGGGACAAACAGGCTATTGTTCTCACTCGGGAAGCTACCAG370.10833601733376277No Hit
TGAGAGATGTTTTCACCTGACATTTGTTGTAGGAAAGACAGTACAG370.10833601733376277No Hit
TTGCACGGGACTACAAATGTAAAGTAAATGTGGTCTCTAGTCCTAG370.10833601733376277No Hit
TACTTTGGGGGCAGTTACTTCCGGGAGCATGGGCTGAGGACTTGCA360.1054080168652827No Hit
CTCTCAGGGGGCTCCCAGCGAGGAGAGAGTGTATATGGTGGGGAAA360.1054080168652827No Hit
AGCACTGGGCTGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAA360.1054080168652827No Hit
ATCTGTGGGGTGTTCTTTATTAATATCCTAACACTCCTCGTCCCCA360.1054080168652827No Hit
TAACTTGGGACGCCTGGGTCTCAATGACAAGGTCCTCTTCGACAAC360.1054080168652827No Hit
GGCAATGGGGCTGAAGAGGAGTCAGGCTCCAGCAGTGCCTCGGAGG360.1054080168652827No Hit
CAACTAGGGACGCTCTTCCGATCTCTGTGTGGGGGGAATTCAGATA360.1054080168652827No Hit
CTGCCCGGGATGACCTGTACACAAATGTGACCGTCTCACTGGTTGA360.1054080168652827No Hit
CAACTAGGGGCCCAGAGTCGCCGCGGTTTCCTGCTTCAACAGTGCT360.1054080168652827No Hit
AATAGGGGGACAGACCGCAACCTAAACACAACTTTCTTTGATCCCG360.1054080168652827No Hit
AAGTATGGGGTCTGTCAAGGGACTGGCTGTCCTAAGAACAACTGAC360.1054080168652827No Hit
GTTTGTGGGGGAAACTTGCCTAGGCCTTGGCTAAGACAGTGGTTGT360.1054080168652827No Hit
TAGACCGGGGAGATCTCTTTCCTGTCTCTACCCGTGTCTGGACGTC360.1054080168652827No Hit
GACAGCGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAGAG360.1054080168652827No Hit
ATTTCTGGGTACGCCAAAGCATTCTCGAGAGATTTGCCCAGAGCTG360.1054080168652827No Hit
ACGCTCGGGAGAGGCAAAGGAGCTGGAGGGATGAGGGCCGGGAGCA360.1054080168652827No Hit
CTTCAGCCGGGGAGCATGAGGGTCTTCAGCGGAGCCTCAGGCTGTC360.1054080168652827No Hit
CGCACTGGGCGATCTGGTCCCGGGACAACTGGCAGGGTGCCCAGTC360.1054080168652827No Hit
GACCGGGGGCGCGCGGAGCTACAGCCATGGCAGTCGCCGTCGAGGG360.1054080168652827No Hit
AATGCTGGGCTCACCCCCAGAAGGACGATGGGGACAACCCAGAGAC360.1054080168652827No Hit
CACAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACTTC360.1054080168652827No Hit
GAATTTGGGATTCAATCAGATCTGTTCTCTCTCTCTTTCTTTCTCT360.1054080168652827No Hit
GTATAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCTG360.1054080168652827No Hit
TCTCATGGGATATAAAAATATCTATATTCTATACATACCCTACCCC360.1054080168652827No Hit
CGTTGCGGGGCGGCTCCCTGGTGTCTGTAGCGGCGATGGCTCTGGG360.1054080168652827No Hit
AGCTGTGGGAGCGGGGTTGCGGGCGCTTGACATGGCGGCAGCGGCG350.10248001639680263No Hit
CCTCTCGGGGGACCTTCTTGAGAAGCTTGTAAGGGGTGGTAGGTTT350.10248001639680263No Hit
TGTCGGGAGGGCCAGGCATAGTAATCGAGTGCTAGCCTGCTACCAG350.10248001639680263No Hit
AGCTACGGGAGAGCAGCAGCCTGCTGACTTTGCAGTGGCTCCCCTG350.10248001639680263No Hit
TAATGGGGGGGAATTCAGATAAAAACGAATAGCTCGTAACCAAACA350.10248001639680263No Hit
CATATGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG350.10248001639680263No Hit
CCAACAGGGGCTTACACTGGTGATTATACGGAAAATGCTCTTAGAT350.10248001639680263No Hit
GTATCGGGGGGTGAGTACCACCTCCTCTGCAACGCCAGGGCCGGGA350.10248001639680263No Hit
TCTCCAGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAAC350.10248001639680263No Hit
TGCTCCGGGATGACCTGTACACAAATGTGACCGTCTCACTGGTTGA350.10248001639680263No Hit
AGTGCCGGGACAATGCTGCTTTTTTAGTGTAAAAGTCACACAAAGA350.10248001639680263No Hit
GGTCTAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT350.10248001639680263No Hit
TAGTTCGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATC350.10248001639680263No Hit
AGCCTTGGGGCTAGTACCTGGGTCACCAGCCATAGGGTACAGCCAG350.10248001639680263No Hit
CGTACTGGGATCCACAGCCTCCTGGTCCCCTGCACTACCCAGTGTC350.10248001639680263No Hit
CATTGGGGGGAGGCCACCACGAGACAGAGATGGAGACCAGCAGCCT350.10248001639680263No Hit
CTGCCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC350.10248001639680263No Hit
TTAGAAGGGTACAGGAGAGGGGGGCCTGAACCTTAGGTTCCTGTGT350.10248001639680263No Hit
CCCTCCTCCCCACTCGGTGCTGAGGCTGCATCCAAACCCCAGTAGG350.10248001639680263No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)