FastQCFastQC Report
Sat 31 Dec 2022
SRR5843399.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843399.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32520
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAGCTGGGATGACTACATAGAGCTCTTTGATGGCTACGACAGCAC570.17527675276752766No Hit
TGCCACGGGGGGGAATTCGAGCTCTTTCGACGTTTTGAAGGAGGGT550.16912669126691268No Hit
TACTTAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA540.16605166051660517No Hit
CACTTCGGGGGCCGCCATGGTGGCGTCTGTGCCGCTGCGGAATGTC530.16297662976629768No Hit
GTACTTGGGACAGTAGAATGGAGGGCAGAATTACTGGGACACAATC500.15375153751537515No Hit
TGTGCTGGGAGATGAGAAGGAAGATTCTTACTTCTCCGAGATCCGA500.15375153751537515No Hit
CACAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACTTC500.15375153751537515No Hit
TTGCTTGGGCGTTTTTAGGATATTGTGAGTAATATAGATTGGCGCT490.15067650676506764No Hit
TGTCGGGAGGGCCAGGCATAGTAATCGAGTGCTAGCCTGCTACCAG480.14760147601476015No Hit
GTTCATGGGATTCAATGCAGAGGCCTAATTGAAGACACGAAAGTAA480.14760147601476015No Hit
CTGACAACCCCATGCCCCTACCAGCTCTGTGCTTTGCCCCGCTAAG480.14760147601476015No Hit
CAAGTCGGGGCAACAGGCCCTCTGGGAATCATCAATACAGAGGAGC460.14145141451414514No Hit
GTGAGGGGTACAAGAGCATCCCTGTGGAGGACAACCACAAGGCAGA460.14145141451414514No Hit
CCGCGCGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG460.14145141451414514No Hit
AGCTCAGGAGTCACAGAAGGTCCAGCTATCTCAACCCCACACTCTT450.13837638376383762No Hit
ATGTTAGGGTGTACAGTGGGAAAGTGCTCCTCCAGACAACACCACC450.13837638376383762No Hit
GCATCAGGGATGAGTGGGACGTTGCTGAAGCCCGCAAGATCTGGTG450.13837638376383762No Hit
TCTGCAGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTG440.13530135301353013No Hit
GTAAAAGGGCCGATCTAGCACTGGGGGGAATTCGAGCTCTTTCGAC440.13530135301353013No Hit
GATACCGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC440.13530135301353013No Hit
GGATATGGGGGGCGGAGGCAGGTCACCAATCCTGCACGGGGCCCCA430.13222632226322265No Hit
CGAAATGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG420.12915129151291513No Hit
TCAACCGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG420.12915129151291513No Hit
TGACTTGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT420.12915129151291513No Hit
AATAGGGGGACAGACCGCAACCTAAACACAACTTTCTTTGATCCCG420.12915129151291513No Hit
CTGCCAGGGATGCACAGACCTGGTCAATCTTTGGCTGATTGAAAGA420.12915129151291513No Hit
TCTATAGGGAGTCCTATAACCCCTGATGGCGGCGGTAGGGACCTGG420.12915129151291513No Hit
CACAAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC420.12915129151291513No Hit
GTGCGAGGGGGGTTTTTTGAATCTCTTGTCATTCTCATCCAGAAGT420.12915129151291513No Hit
CGTTGCGGGGCGGCTCCCTGGTGTCTGTAGCGGCGATGGCTCTGGG420.12915129151291513No Hit
CTACACGGGGCTTCAAGGCTCCACCATGTTCTCGCGGGCGAGCGTT410.12607626076260764No Hit
TGACTTGGGATTGAAGTATCAATTTGCCCTGGCAAATGTACACACC410.12607626076260764No Hit
TTAGCGGGGAGAGCAGGATGGCGGCGACAATGTCTGAACCTCGGCG410.12607626076260764No Hit
TTATAGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG410.12607626076260764No Hit
CATTGAGGATTTCAAGCCCTCAGATGGGAGCGAGAATGAGATGGAG410.12607626076260764No Hit
ATGCTAGGCACGCTGCTCGAACAGTGATACGCACACTGATAACTAT410.12607626076260764No Hit
GTCAGCGGGGGGAATTCAGATGCCTGGATAGGTTCAAGTTACGTTT410.12607626076260764No Hit
AAAAAAGGGGGACAAGCCCAAGATGGAGGCGGTGGTGGTGGTAGCG400.12300123001230012No Hit
TAAACGGGGGGGGTGAGAGCGCCGAGGGCCTCAGCCGAGTCCACAG400.12300123001230012No Hit
CTCACTGGGGATCTTCAATACCTGTGATGTAAAACAAAGAAGAGAA400.12300123001230012No Hit
ACCCAAGGGTACTGCGGAGCCCGCAATCTGGATCAGCAGGAGCTGG400.12300123001230012No Hit
CATAACGGGACGGTCGCACTGAACTCGGATAGGTCTCAGAAAAACG400.12300123001230012No Hit
GCACCGGGATTCTTTGGGCACCCAGAAGTTTATATTCTTATCCTCC400.12300123001230012No Hit
TATCTAGGGATTGTTACATTGTTCACTTTTAGTGCTGGTGTCTGTT400.12300123001230012No Hit
GTTTAGGGGGGCCTCGTAAGCTCCCAGGGCCCACCTCTCTTCCCCC390.11992619926199262No Hit
TGTAGTGGGGTGCAAGGAGAGGCCTCAACCTCCAAGCGCCTGTCCT390.11992619926199262No Hit
AACAAGGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT390.11992619926199262No Hit
GTGCCTGGGATCTTGCTCTGGGGGGAATTCGAGCTCTTTCGACGTT390.11992619926199262No Hit
CTTTTGGGGAACCTGCAGGGTGGCGATGACCTGGACCCCAACTACG390.11992619926199262No Hit
CGCTCGGGAATACAAGGGCGAGTGGAAACCACGTCAAATTGACAAC390.11992619926199262No Hit
TGCTCCGGGGCTGAAGAGGGAGCTCAGGACGATGAGGTTCTGCTGG390.11992619926199262No Hit
ACGTCAGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG390.11992619926199262No Hit
AGCACGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTG390.11992619926199262No Hit
TTCCCAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT380.11685116851168512No Hit
TAGCATGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG380.11685116851168512No Hit
AGCTGCGGGGGGGCACCGAAGCTTTCAGCTTTGGGGGTCATTCTAC380.11685116851168512No Hit
CAATGCGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT380.11685116851168512No Hit
ATTGCGGGGACAGGAATCATCACCCAGGGGGCCCGTGACTTTGGCC380.11685116851168512No Hit
GCGCATGGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTAT380.11685116851168512No Hit
TCTTCAGGGATCCCACAAAGTAGAGTTGTGTTGGTCTCTGGACCCT380.11685116851168512No Hit
CCTCCAGGGGATCTTTCGCGGGGGCTGCAAGAATCAGGAAATAGTT380.11685116851168512No Hit
TAGTTCGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATC380.11685116851168512No Hit
ATATCTGGGGGAGAGCAGCCGTGAAGCCCTGGTGGAGCCAACTTCA380.11685116851168512No Hit
ACGCTCGGGAGAGGCAAAGGAGCTGGAGGGATGAGGGCCGGGAGCA380.11685116851168512No Hit
ACTACAGGGACGTCTGTAGTCCCTGTCCTCCCTTCTGTCCTACCCC380.11685116851168512No Hit
GCTTAAGGGTCCCCCGAGTGTTCTTTGGCTCACTAACACCTCTAAG370.11377613776137761No Hit
CGCCATGGGGAGCCCACCACATATTCACAGTAGGATTAGATGTAGA370.11377613776137761No Hit
CTTCAGGGAGGGGAGCGGGGTTGCGGGCGCTTGACATGGCGGCAGC370.11377613776137761No Hit
TATAGTGGGGTGGGCTGTGGTGGGTAGGCTCAGCTCTGCCATCCCT370.11377613776137761No Hit
ATCTCCGGGATACCAACAGAATGTGCCATCAAGGTATTTAAAACAA370.11377613776137761No Hit
TAATGGGGGGGAATTCAGATAAAAACGAATAGCTCGTAACCAAACA370.11377613776137761No Hit
AACTAGGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT370.11377613776137761No Hit
ATTGCCGGGAAGCCAAATAAATCCTTTCCTCCCCAACTTGCTTTTT370.11377613776137761No Hit
GAGCCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC370.11377613776137761No Hit
CAAGGAGGGGCAGGGATGGCGGCAGGGCAGGGTGGGTGGCTGCGGC370.11377613776137761No Hit
TCGATAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC370.11377613776137761No Hit
GAACTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCTG370.11377613776137761No Hit
ATTGCCGGGGGATTGTGTGAACGAGGTGATTGGCATCAGGCAGCTC370.11377613776137761No Hit
TCTTCTGGGATGGTGAGGTTCTGGAGAATCGATGAGGATTGTCCGG370.11377613776137761No Hit
TGAGAGATGTTTTCACCTGACATTTGTTGTAGGAAAGACAGTACAG370.11377613776137761No Hit
CTCTTGGGGGTCCTGTAATAAAGGCATGCTGGGCCGTCCACCTGTG360.11070110701107011No Hit
ATTAGCGGGAGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTT360.11070110701107011No Hit
TCTCCAGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAAC360.11070110701107011No Hit
CAACTAGGGGCCCAGAGTCGCCGCGGTTTCCTGCTTCAACAGTGCT360.11070110701107011No Hit
TACTTAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA360.11070110701107011No Hit
ATGAGTGGGGGAAGAGTTAAGTGCTTGCAGCGGTACTGGCTGTGGC360.11070110701107011No Hit
TTTCAAGGGGCACTGAACTCGGATAGGTCTCAGAAAAACGAAATAT360.11070110701107011No Hit
TTTAGCGGGGGGTCCGAGCGAGCGCGTCCTTGCTTCAAAGAGATAG360.11070110701107011No Hit
CACTCGGGACCTGCTGGCTGGATGGGCTTGGACTGTGGTACTGAGA360.11070110701107011No Hit
TGCAATGGGGGTCTCTTTCCTGGTTCCCAACCGCGCCAGGTGACTC360.11070110701107011No Hit
ACTAATGGGGAGGCAGGGCGGAGGCGCAGTCTGCACCATGGCGTAT360.11070110701107011No Hit
GCTCATGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA360.11070110701107011No Hit
TTAGTCGGGTTGACAGGTAAATGGATGCGCTAACTGGCGCACGCCT360.11070110701107011No Hit
CTTGCTGGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAA360.11070110701107011No Hit
TGTTCTGGGTGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG360.11070110701107011No Hit
AGTCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC350.10762607626076261No Hit
ACCTTTGGGGCCCTGATCTATCTGTTAAAGGAACGTCTACAAGGTC350.10762607626076261No Hit
GCCATGTCCACCTGGTGAAGTTACTGGACAGTGACCAGGAACTGTA350.10762607626076261No Hit
CGTCCAGGGATTCCATACAACCATTGACATTGGCGTTAAGTATGCA350.10762607626076261No Hit
GTATTTGGGATGCCACAACTAGATACATCAACATGATTTATCACAA350.10762607626076261No Hit
GGCAATGGGGCTGAAGAGGAGTCAGGCTCCAGCAGTGCCTCGGAGG350.10762607626076261No Hit
AAAGCAGGGGGTGGTTGTGATGACTGCCATGAGTCTCCTGGTGCTT350.10762607626076261No Hit
ATGCGAGGGACCCGGCTGGTGTCTCTTCCTTTTATAGTCAGCAGCA350.10762607626076261No Hit
ATAAGCGGGAGAAAAGCAGAGGCCTGAGCAGGCCAGGCCAGCCCTC350.10762607626076261No Hit
CAGTCAGGGGGTAAAGAAAGTGTGGGTTGGTTAGGGGAAGGCACAC350.10762607626076261No Hit
ACGCCAGGGATTAAGTTGTGGTTGAGCTCCCGGGCAATGCTGGGCG350.10762607626076261No Hit
GTCTACGGGCATCTAAAAAAAAATGTGGCTTTCATTTCTTGGGAAC350.10762607626076261No Hit
GTAATCGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT350.10762607626076261No Hit
GGTCTAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT350.10762607626076261No Hit
TGTGCTGGCTGAAGGAGAGAAAGGAGAGAAAGGAGAGAAAGGAAAG350.10762607626076261No Hit
AGCCTTGGGGCTAGTACCTGGGTCACCAGCCATAGGGTACAGCCAG350.10762607626076261No Hit
GTTTCTGGGGAGAAGGTATGCAGCAATGACAACAAGACCTTCGACT350.10762607626076261No Hit
TTATCCGGGGTGTTCTTTATTAATATCCTAACACTCCTCGTCCCCA350.10762607626076261No Hit
GCTTCCGGGCGGACAGTCTGTGGTCACTGCCAATGACGTCAGCGAT350.10762607626076261No Hit
TCTACCGGGAGGAGGTCTGACAGCTCGGGTCCTCTGGAGCACAAGG350.10762607626076261No Hit
GTCTTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACTT350.10762607626076261No Hit
CTTCAGCCGGGGAGCATGAGGGTCTTCAGCGGAGCCTCAGGCTGTC350.10762607626076261No Hit
CACGAAGGGGCTGCTCACTGCTGCGGCTGCGCCTCCTTGTTCTCAG350.10762607626076261No Hit
TTCGCTGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAAC350.10762607626076261No Hit
GTACATGGGAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGGAGCT350.10762607626076261No Hit
GATCTAGGGCAGAGTGTCCTGATCAGTCAGCCAGGCATGGCCACCG350.10762607626076261No Hit
CTCACAGGGGCTTCAAGGACGTGGTTAACATGCTGATGTACCACGA350.10762607626076261No Hit
ACGCACGGGAGACAGACGCAGAGCTGGGAAAAGGGAGGCTGTGGAG350.10762607626076261No Hit
GCAGTGGGGGCATTACTATACTACTAACAGACCGCAACCTAAACAC340.1045510455104551No Hit
AAGAGTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT340.1045510455104551No Hit
CAATATGGGGAAGCGCCGCGGAGGGTCAATTTCAGTCATGCAGGTT340.1045510455104551No Hit
TGCTTAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA340.1045510455104551No Hit
ATTAGTGGGCCAACGTGCTGTGTCTGTCCAAGTCCCCCAATAAGCA340.1045510455104551No Hit
AGTGGTGGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTAT340.1045510455104551No Hit
TCTTTTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA340.1045510455104551No Hit
CAAAAGGGGGCGGCCACGTCGCTGTCAGCGATGGGCGCCACATGTT340.1045510455104551No Hit
CGTACTGGGATCCACAGCCTCCTGGTCCCCTGCACTACCCAGTGTC340.1045510455104551No Hit
AAGCTAGGGGAGTCCCTCTTGGTCCTCCTGACCTGTCCCCTGTGCA340.1045510455104551No Hit
GGTGCTGGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAA340.1045510455104551No Hit
CTTCCAGGGGGGAATTCCAGCAGCGATTAAGGCAGAGGCGTTTGTA340.1045510455104551No Hit
TTCCTGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC340.1045510455104551No Hit
CCCAAAAGGGAGAGGCGGTGGACAGCGAGCGGGCATGAGCGCGTCC340.1045510455104551No Hit
TCACACGGGGAAACTAAGTCCTCTTTCAATGGCTTTTAAATTATTC340.1045510455104551No Hit
ACCAATGGGAGGACCAGCACCGGAAGCTGTGGGAAGAGCAGCAAGC340.1045510455104551No Hit
TTAGAAGGGTACAGGAGAGGGGGGCCTGAACCTTAGGTTCCTGTGT340.1045510455104551No Hit
TTCACCGGGATGGTGAGTGAGCCCTTGCCAAACAGCCAAGATCCCA340.1045510455104551No Hit
GCATTAGGGGCGTCTCCGGCATTTGAATCGCGCTTCCGCCATCTTT340.1045510455104551No Hit
CTCTTTGGGAGAGAGCCTCGGCTAGATCATTCCTTGAGGACAGGAC340.1045510455104551No Hit
CCCAGCCAGAAAGACCCATCACTGTCTTGTCTGTCCTCGTGCCACA340.1045510455104551No Hit
GTACCGGGGACTGAGCGTGGCTATTCCTTCGTGACTACTGCCGAGC340.1045510455104551No Hit
TTGTAAGGGGATCTAGCACTGGGCTGTTTCAAGGGTTTGAGCTGCT330.10147601476014759No Hit
GGAATTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA330.10147601476014759No Hit
ATCCTTGGGGGGCTTGGCTTCGAGAGCAAGGCAAGGAGGTCGGAGA330.10147601476014759No Hit
TTAAATGGGATTCTTACATAGTGACAGTTATAGTAAGGCTGGCACC330.10147601476014759No Hit
TTTAAAGGGGAGCCCACCACATATTCACAGTAGGATTAGATGTAGA330.10147601476014759No Hit
CATATGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG330.10147601476014759No Hit
GACGCAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA330.10147601476014759No Hit
TAACAAGGGGTGTTTGATAAGGTAAGGCTCGGGCGCATTCGTGGGC330.10147601476014759No Hit
GTACTAGGGGATGGCTGCGGCTGCTGAGAGAAACAAGGAGCCCATC330.10147601476014759No Hit
CGCTTGGGGTTTCTCCAGCAGCCGAGCAAGATGCCCAAAGGGAAGA330.10147601476014759No Hit
AGCAAAGGGAAGTGGCTCAGTTTCCCCTGCGGATGAGAGACTGGCT330.10147601476014759No Hit
CGCACTGGGCGATCTGGTCCCGGGACAACTGGCAGGGTGCCCAGTC330.10147601476014759No Hit
TTAAAGGGGGCACACGCCGTCAGGTGCGTTCCAAGATGGCGGCCCT330.10147601476014759No Hit
TTTCTGGGGCGATCTAACAGCGGGAGAAGCAAGGATACTGGTGATG330.10147601476014759No Hit
AGGTTGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC330.10147601476014759No Hit
TTGCACGGGACTACAAATGTAAAGTAAATGTGGTCTCTAGTCCTAG330.10147601476014759No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)