FastQCFastQC Report
Sat 31 Dec 2022
SRR5843397.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843397.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37769
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATTCTGGGCTAGCACCGGGTAAGGGTTTCCACTCTGCACATTGTA620.16415578913924117No Hit
ATGCTTGGGTGTGTGAAGAGACTGAGGCTGCACGGGAGGCCCCTGG610.16150811512086632No Hit
CTATTAGGGATACGCGGAGGATTCCAGCCCACTCTGGCAGCAAAGG610.16150811512086632No Hit
CTACCTGGGGAATGAAAATACCGAAGATCAATACTCCCTGGTAGAA590.1562127670841166No Hit
TGGCGAGGTTTTAAGAAGTCTTTTCTTTGTGGACAAGCACGGGGAT580.15356509306574173No Hit
GAATAAGGGGAGTGACGCAGGGCCCTCACGTGACCCGGGGCTGCAG570.15091741904736689No Hit
CAATAAGGGGGGTTTTGGGAAGTGCACGGGGCGACGATGGCGGCGG540.14297439699224232No Hit
TAAAATGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT540.14297439699224232No Hit
CAATAGGGGATGCTACTTGGTCATACTAGAGAGCCAGGCAAGCTTG530.14032672297386747No Hit
AATCCTGGGGCTGGCTGGAGGCGTGATCCTAGGTGTAGCTCTGTGG530.14032672297386747No Hit
TTCAAGGGGAGATACAGTTGTTTGTCTCTAGACTACGCTGCGCTTC520.1376790489554926No Hit
ACTCTTGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT500.13238370091874288No Hit
CTACTGGGGAGAGCATCCCTGGAGCATCTAAGAGGAAAGCACAGCT500.13238370091874288No Hit
AAAAGTGGGGATCTTCACCCGCCTCAACCTCTACCTGCATTCCGGT480.12708835288199316No Hit
CAGCACAGTAGTAAGTTCATGCTGGTCCTGGCCAGTAACCAGCCTG480.12708835288199316No Hit
CGTCTAGGGGACCTTGAGGTGCGGAGGGCCTCAGCTGCGGCTGTTT480.12708835288199316No Hit
GAGTTAGGGGGACTTGTTTCGGAAGGAGCTGACTGGCCAATCACAA480.12708835288199316No Hit
TAACAAGGGGGCCTCTCTGTGGCAGACTTGGCTGAGAGCATAATGA470.1244406788636183No Hit
AGCACAGGGCGCCATGCAAAGGAGTACCTGTCCCGAGTGTCAGGAG470.1244406788636183No Hit
GCAACAGGGAGCTCCAGAAATGGCTACCGCGATGACAGTTTCCAGT470.1244406788636183No Hit
CATTCAGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG470.1244406788636183No Hit
AAGAAAGGGAGAGCCAGAGTCTGCGATCCGCAGAGCAGCAGCCTGC460.12179300484524344No Hit
CACGATGGGTGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCCTT460.12179300484524344No Hit
GCCTCCGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG460.12179300484524344No Hit
CATGCAGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG460.12179300484524344No Hit
CTTACCGGGCAGAGGTTAGAATGCTGGGTGGTTAGAGCCTTGCTGC460.12179300484524344No Hit
TTAGTCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC460.12179300484524344No Hit
TCAAAGGGGATCAATGGGAACATAAAGACAGTGACTGAGTACAAGA450.11914533082686861No Hit
GCTGAGCGGCTTCTAGCATCCACACAGCAGGGATCCATTCTGCCTG450.11914533082686861No Hit
TGAGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCCA450.11914533082686861No Hit
GTAGTTGGGACTAACAGCTGGAGACTCTAGCTGGAGCAGTTGGCTC450.11914533082686861No Hit
CTTCCAGGGGACACGCGACCGAGCCGGTGCCGGGGGAAGAGCCTGC440.11649765680849375No Hit
GATTAGGGGGATCTCACACCGGGGATCATCCTGGGGGTGTTTCGGA440.11649765680849375No Hit
CAACATGGGGACCCACCAAACTCATGCATATCACATAGTTAATCCA440.11649765680849375No Hit
CGGGCTGGGAGAACGTGTTATGAAGAAATGTTGAAAGAAGGTTACA440.11649765680849375No Hit
ACATGAGGGGCTCCCTGCTGGCCGCGGTCACCTACCGGCGCCCGGC440.11649765680849375No Hit
AATTGAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT440.11649765680849375No Hit
GGCAACGGGGGTGGTCAGGAAGTCATGGAGGGAGACTAGTGCCTAG440.11649765680849375No Hit
TACTACGGGATACACAGGCCAGCAGGTGTGGGGAATGCAGCCCGCT440.11649765680849375No Hit
CAGTTAGGGGTCCTGAAGGGCCCTCCAGAGTGATGACTCCAGTGTG440.11649765680849375No Hit
GCTATAGGGGGCCACGCTACATCGTGGTGTATGTTGTATGGGCAGC440.11649765680849375No Hit
CCTAGAGGGGGGCCGGGGTCGGAGCATCGCGTACCCCGCCATGTTC430.11384998279011889No Hit
TTATAGGGGAGAGTCTTGTTGGAGCTTTATCCCTTTGTCCTAGCCA430.11384998279011889No Hit
TGCTCAGGGGGCGCCTTTCCTGGCTGTCGGAAGCTGCGGACTCGTC430.11384998279011889No Hit
CATACAGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG430.11384998279011889No Hit
TAGCATGGGGTGGGTGGTGGATCAGGTGATCCGAGGGGCTTCGGAG430.11384998279011889No Hit
AAGCCCGGGCAGCCTGGGTGCACTGATGGAGATACGGACTTGGGGG430.11384998279011889No Hit
TGAACGGGATGACCAAAGTGGAGTTCGAGACGAGCGAGGAGGTGGA430.11384998279011889No Hit
GTAGCGGGGGGTTCGGGTAAAAATGGCTGAATATTTAGCTTCGATA430.11384998279011889No Hit
TATTTAGGGAAGGATGGGGTGGGTGCCACTGGGTGTGGACAGAGAG430.11384998279011889No Hit
ACTCATGGGCCTCGTGTTAGATATTGAGGCTGCTTCGTGTCGGCAC430.11384998279011889No Hit
GCAGTCTATAACCCTGAGGCTGTGAATGAACCCAAGAAGAAGAAAT430.11384998279011889No Hit
ACTACCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC420.11120230877174403No Hit
TCGCTAGGGAGTAGGAGGCAGTTTCCCTGTTACACTCAACAGATAC420.11120230877174403No Hit
TTGCTAGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG420.11120230877174403No Hit
AATGCAGGGGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCCTTT420.11120230877174403No Hit
AATGACGGGGGGCCGAGTGGAGACTGGTGTTCTCAAGCCTGGCATG420.11120230877174403No Hit
AGCAGCGGGGGGGCTTCGGAGGGTGTTTGAGCAGTTGACTTAGGCC420.11120230877174403No Hit
CTCACCGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT420.11120230877174403No Hit
TGTGCTGGGCATGATATATGCAATATATTCCAGATGTTTTGAGAGA420.11120230877174403No Hit
ATGTATGGGGTGTGGAGCAAAAATACATCTTTAGCCATGGATGTGT420.11120230877174403No Hit
CGCGATGGGACCGCTCCCAAGCGCGGCGGCGGCAGCGTAGTTCCTA420.11120230877174403No Hit
CCATTAGGGGGTCTTTTGCGCTCCTTAGCCCTCTGTCCACGCACTG420.11120230877174403No Hit
TTGCACCGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAA420.11120230877174403No Hit
TCTACCGGGATTTATCAGATTTGGGAAGATGGGAGTGCTGAAGAGC410.10855463475336917No Hit
AAAGCGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT410.10855463475336917No Hit
GACAGAGGGGCCCCAGGGGGTGCCTCCTCTCCCAGAGCTGACGAGT410.10855463475336917No Hit
CCAGCTGGGGCTCTCTGAAGAGGCAAATTGCATTTCTTGCGGCGCA410.10855463475336917No Hit
CAACAGGGGGGCCTCGACACCGCGGCCCAGTAGCCCAGGCCTGCCC410.10855463475336917No Hit
ACCTTCGGGATCTCGAGCCGGGGGAGGAGCAGCGGGCTTGTCGTTG410.10855463475336917No Hit
GTGGCCTTTTCCGTCCTTCCTGATACATCCTGCTTCTCCCCCAACT410.10855463475336917No Hit
AGCTCAGGGGATCGCACCCGGAAGTGAAGCTACTCCGTAACGGAGC410.10855463475336917No Hit
TGTCCAAGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAA410.10855463475336917No Hit
CTGGCTCAGTTAAACGCTGGAGACAAAACTAATCTGCCACAGTGGG410.10855463475336917No Hit
TGCAAAGGGGCGGCGCGGTCGGCCTTCCCGAGCGGGACGCGCGCGG410.10855463475336917No Hit
GTAATGGGGGTCCTGGCCTACTTCACATTCTGCCTGTGGATAATCC410.10855463475336917No Hit
CGACTAGGGGGGGTAAAAGTCGCACGGAAGAGCAGCGTCTGTTCTG410.10855463475336917No Hit
AACAAAGGGAGCTGGATCCATCCCCTCAAACTATATATAAATGGAT410.10855463475336917No Hit
CACCTAGGGGGCACTCGCGCCTTAGGAAGCTTGGGTGTGTGTGGCG410.10855463475336917No Hit
TTATCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC400.10590696073499431No Hit
CTCTGGTGGGGACGGGATCATGGGGCTTCTGACCATTCTGAAGAAG400.10590696073499431No Hit
GTCTCTGGGGGTATCCCCGAAGGGGCTAAGATCGCCCAAAATGTCA400.10590696073499431No Hit
ACTAAAGGGACTTCTATGACATGGAAATTATTGAAGAGGAAGCTTT400.10590696073499431No Hit
TCCCCAGGCTAACAACCACAGCCCCTCACTTTTAGAGATTAGGAGA400.10590696073499431No Hit
AAACTGGGGGAGCCCGGCTGCGCGCGCATATGACACTCAGTTGAGG400.10590696073499431No Hit
CTCCTCGGGCCTGAAGCGCAGATTTCCTGTGGAGTAAGGACACTGA400.10590696073499431No Hit
AGATTTGGGTAGTTCTTGTAATTGCTCATTTCTAGGTTCTGTTTTT400.10590696073499431No Hit
TCTGAGGGGAACCCAAGTGATTGAACCAACACTACTCACTACTTTC400.10590696073499431No Hit
TATATGGGAGGCTGCCCAGGCCAACATCACCCTCCAGGAGCAGATT390.10325928671661945No Hit
GTTAAAGGGTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCC390.10325928671661945No Hit
GTGACAGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG390.10325928671661945No Hit
CAATGGGGGGAATTCAGATAAAACGAATAGATCGTAACCAAACATG390.10325928671661945No Hit
TTCAGAGGGGCCCCCCAGTTACTGACAGAGGAACCATTTACAAAAG390.10325928671661945No Hit
CTAATAGGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTAT390.10325928671661945No Hit
TAACATGGGGACTTCCGCCCAGGAGCGAACGATTGCGCTCTTTACC390.10325928671661945No Hit
TTACTAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT390.10325928671661945No Hit
TCCGCAGGGACCCCCACTTGGGAAGGCTGGATAATCAGGGCAAGAT390.10325928671661945No Hit
GTTATAGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG390.10325928671661945No Hit
TTGCATGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG390.10325928671661945No Hit
GTATATGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG390.10325928671661945No Hit
CTTGTCAGGGAGGTCAGCGAGCGGCCGTCCCAATGTGGGGATGCGG390.10325928671661945No Hit
AAGCCCGGCGAAAAGCACAGACTATGGCGCTGAAACGGATTAATAA390.10325928671661945No Hit
CAAATTGGGGGGGGTCCCGGGACTAGAAGAAACGGCGGCCGGGAGG390.10325928671661945No Hit
CGCAAAGGGCTGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAA390.10325928671661945No Hit
CAATCAGGGGTGAACCTTAGCGCTCGATCCCGAACTAGCGGCCATG390.10325928671661945No Hit
GCTCAGGGGGGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCCTT380.10061161269824459No Hit
ATATGCGGGGCACAGCGGTGTCATCTGTCTAGGTAGCGGCTTCACC380.10061161269824459No Hit
TCCACCGGGTGTTGCCCTGGATTTTGAGCAAGAAATGGCTACTGCT380.10061161269824459No Hit
CTACCAGGGAGCTCAGATGCCTGCTTGATAAAGCACTGTGGGGGTA380.10061161269824459No Hit
TCAGCCGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT380.10061161269824459No Hit
ATTCAAGGGGAAGCACCGGAAAGATGGCGGAGGAAGGGGAAAGAAA380.10061161269824459No Hit
GACTCAGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG380.10061161269824459No Hit
CTCGCAGGGGACCCAAGCCAGCCTGCAGATGAACCTCAAAACTTGT380.10061161269824459No Hit
CCATGAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC380.10061161269824459No Hit
CAGTATGGGAAACCGGAAAGGGAAGTGGTTGCGCCCGCCGGGCCGC380.10061161269824459No Hit
TCTTTGGGTCCGCCCCCCTGAGCCTTTGCGGGACTCGGCCTCTAGG380.10061161269824459No Hit
TGAGTAGGGGACGCCTTCCGATCTGCAGCCAGGCCAGTCCCAGCGA380.10061161269824459No Hit
TAAAGCGGGGTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATCC380.10061161269824459No Hit
TCCATGGGGGCAGCGTCTGTTCTGCACCAACTCAGAGTCTTGTTGG380.10061161269824459No Hit
CACAACGGGGGGAGGAGTCCTGGAGGGGCTGTTTGTTACGACAGGC380.10061161269824459No Hit
TAGCCTAGGGGAGTTTCGGTGGGGGGCTCGCACGGGACCCTCAGAT380.10061161269824459No Hit
TTGTGAGGGGGATTCCGGGAGGCCGAGGTGCGGCTGCAGTGATGGC380.10061161269824459No Hit
CTTAGTGGGGAGAGAATGATGGATAGAGAAAGTCATTTTGTGAGCC380.10061161269824459No Hit
TTGCATGGGGGCCGTCGGGGCATCCTGCTTCTCTCAATGACTCTCA380.10061161269824459No Hit
TCTGTTGGGGCGCGCGCTCGTGCACCACGCGCCCCGTGCGGCCCGC380.10061161269824459No Hit
AGGCGGGAGACCGCAGGGATGGCGGCAGGGCAGGGTGGGTGGCTGC380.10061161269824459No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)