FastQCFastQC Report
Sat 31 Dec 2022
SRR5843396.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843396.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20481
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAGACGGGGAGAGCGGGCGGCGGCGGCGGCAGTGGAGGCGGCGGC300.14647722279185588No Hit
GTCATTCTTTCCATTGTGCCAAAGCTAGCAGCTCACTTGTAGTGCT300.14647722279185588No Hit
CCTTTAGGGGGGTGCGGCCTAGGCAGTGACAACAGCTAGGATGGCT290.14159464869879398No Hit
CGTCAGGGGCTGGCCAGTGGGTCTCGCCTGACCGACAGCAGCAGCA280.13671207460573215No Hit
CGATGTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA280.13671207460573215No Hit
TTCTTAGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG270.13182950051267028No Hit
GCTGTAGGGGGCTGTTCACCGCGCTCTATTCGCTCATCTTCGCGCT270.13182950051267028No Hit
GCTTATGGGGGACACCGCCCTGCTCTCCATTCCTGTAATGGCTGCT270.13182950051267028No Hit
CTCTTAGGGGGGAATTCGAGCTCTTTCGACGTTTTGAAGGAGGGTT270.13182950051267028No Hit
CCACAGGGAGGGGAGGGAACCCCAGCTGGGTTAGAATTGGAAGGGA270.13182950051267028No Hit
GAGACAGGGAGTCCTGCTGAAGCCAGTTTGAGAAGACCACAGCACC260.12694692641960842No Hit
ACGCTGGGGGCAGGCAGGTGGGGCAAGATGGCTGCGGTGCGAGGCG260.12694692641960842No Hit
TTGCCCGGGGGCTTGGGACCTCCTTTGCCATCTGTTATTCAGCTCT250.12206435232654654No Hit
GCTGGTGGGAGGACTGGTTTGTGGGCCGCAGCAACGCCCAGGGAAT250.12206435232654654No Hit
GCCATCGGGGACGCGGCCTGGGCAGATCCTTGCAGAAAGCTGCAGG250.12206435232654654No Hit
CTGCTCGGGCGCTCTTCCGATCTTCACTAGGGGTGTCCAGCCGCTT250.12206435232654654No Hit
CACGGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGGA250.12206435232654654No Hit
TACCCAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC250.12206435232654654No Hit
GTCATTGGGGGGGTGCGCGCGGGGTTGGGCGTACACGGTGACGCGC250.12206435232654654No Hit
CATCAGACAGTAGAATGTAGGGAAAAGCTTTTGCCCGATGGATTTT250.12206435232654654No Hit
CTGAATGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC240.1171817782334847No Hit
GCTTTAGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG240.1171817782334847No Hit
CTTAAGGGTGGTTTAAGAAGGAAACCCACAAGAATCATGTGATTGG240.1171817782334847No Hit
GTACACGGGAGCTATCATGTAGGTATTTGTGTGTAATTTCAGTGAA240.1171817782334847No Hit
CAGCTAGGGAGGCTAAGGACTTGTTTCGGAAGGAGCTGACTGGCCA240.1171817782334847No Hit
CTTAATGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT240.1171817782334847No Hit
ATCTCAGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG240.1171817782334847No Hit
TTCATTGGGGGAGCAGCAGCCTGCTGACTTTGCAGTGGCTCCCCTG240.1171817782334847No Hit
CCTACTGGGGAGAGGGCCGACGGGGAGCCTGAGCCTGCCTCGCGTG240.1171817782334847No Hit
CACGCCGGGGGGGCTGGTCCAGCAACCCGCAGGATGTCGGAGGTGC240.1171817782334847No Hit
GGCACTGGGGCGCCAGAGTTTGCCAAGAGGAATGTTAAGTTGATTG230.11229920414042283No Hit
CGTTTGGGGGCACGCCGAGGGGGCGTGGCCGACGAGGTGGCAGCAA230.11229920414042283No Hit
CTACCTGGGAGAGGAGGCCAAGTTATATGGCATCCAGGGTTTCTGC230.11229920414042283No Hit
GCGGCTGGGGGCAGCTGAGGGACAGCTGACGCTGCAGCAGTTTGCA230.11229920414042283No Hit
AAGCACGGGCCTCTGGATGTCATCCAAATGGCTTTCCATGAACGTC230.11229920414042283No Hit
AGACCCGGGGTGCGTAACCCTGTACGGCACCGCTCTCTTTTCCGGT230.11229920414042283No Hit
CAACCGGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG230.11229920414042283No Hit
TTCACTGGGGAGTAGGCACTGGGCTGTGATGGGGCTGCCTGGCTCC230.11229920414042283No Hit
GATGCTAGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG230.11229920414042283No Hit
CGCACTGGAGGGCGGACAGAGCATGCACCGTGCTCCCGGCACTTGG230.11229920414042283No Hit
CTCCGTGGGGAGGGGACGTTTCCGGGAATGTAAGCGCTCCGGCGTT230.11229920414042283No Hit
TAACACGGGGGATAGGCAGTCTGGAAAGAAAAGAGGCTTTGGCTTT230.11229920414042283No Hit
CACATCGGGGACAGAGGGGAGGAGGCCGGCGGCCAGCAGCATCGGC220.10741663004736096No Hit
GCTACAGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG220.10741663004736096No Hit
GATGGGGGGAACCTAATACTAAGCAATATGAAGCTGCACTCTGCTT220.10741663004736096No Hit
GCGACAGGGGCTGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGA220.10741663004736096No Hit
TACATCGGGGGCCGCGGTCATGAGCCGGCCCAGCCGGTTGCAGAGG220.10741663004736096No Hit
GCCTGGGTGTGCCCTGGGGCCTCTCAGAAGCACAAATGCTGCCCCC220.10741663004736096No Hit
CGCAGAGGGCGTCTACAACCCCTTTGAGAACCGAGAGCCCCCACCA220.10741663004736096No Hit
TTACTCGGGTGCTGAGAGGGAAATTGTTCGTGACATAAAGGAGAAG220.10741663004736096No Hit
TACTTGGGGGGGGAACGGCGGCCGCACTAAAGGGGGCCGACATGGC220.10741663004736096No Hit
CTAGACTAGGGAAGTTCACCTTGACAAGAAACAGCAACACCAGAAG220.10741663004736096No Hit
CGATCTGGGGGAAAAGCTCTAATTTTCTACTTTTGTTAATTCTATG220.10741663004736096No Hit
GTTTCAGGGGAGAGGAAAAGTGAGCTGTGCTGTGGCTCCCGCGGCT220.10741663004736096No Hit
CCATACGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG220.10741663004736096No Hit
TCTTTAGGGATGGCAGGTAGACACCAAGGAAGAAGTCTGGTCCTTT220.10741663004736096No Hit
GCTTCAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC220.10741663004736096No Hit
CAACTTGGGGAGAGGACTGTAGCCAATGAAGTGGCGGAGTTAACAG220.10741663004736096No Hit
GTAGGCAGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG210.10253405595429911No Hit
CATAGGGGGGTCTGACGGAAGTTAGAAGATGGCGGCGTCCGCAGTC210.10253405595429911No Hit
AAAACGGGGTTTCGGAAGGAGCTGACTGGCCAATCACAATTGCGAA210.10253405595429911No Hit
TAGCTCGGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGC210.10253405595429911No Hit
ACAAAGGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG210.10253405595429911No Hit
TGGACAGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG210.10253405595429911No Hit
TGCCTAGGGGAAGGAGAGGTGTATGCCATTGAGACCTTTGGGAGCA210.10253405595429911No Hit
CTCGTTGGGCATGGTGGTTTGTTTCTATGCAAACTGGACACAAATA210.10253405595429911No Hit
AGCATGGGGGAGGAGATGAGTAGAAATGGGTTTGGGGACCGGTTCA210.10253405595429911No Hit
TTCTAAACTGACCCCATGATAGACAGAGAATGTTGTCTGGTTTTGT210.10253405595429911No Hit
TATAAAGGGAGCCCTAAAATTGTCCTTTTGGATTTTGACTTGCTGG210.10253405595429911No Hit
CTTTTAGGGGGAGTCCTGCTGAAGCCAGTTTGAGAAGACCACAGCA210.10253405595429911No Hit
TGCTGAGGGATCCCAGGACAACTGCTGCCACCCGTTTCCACTTTTA210.10253405595429911No Hit
TAACCTGGGGGCAGACTGGATCGCGAGCGCCGGCCGGCTCCTGCAG210.10253405595429911No Hit
GGCATAGGGGATGCATGCATGTGTCGGCTATACATACGGAGGTCAG210.10253405595429911No Hit
AGAGCTGGGTGACGTGTTTATCTTGGGGCAGAGCCCAGGATAGATT210.10253405595429911No Hit
CACCACGGGTGGGCAGTGGGCCTGGAGCACATCAAGATGTCGACCA210.10253405595429911No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)