FastQCFastQC Report
Sat 31 Dec 2022
SRR5843395.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843395.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19732
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGAGGGTACTATAACCAATATTAACATCTTCAGAAAAGGGCCAA310.15710520981147374No Hit
TGCACTGGGAAATGCCACCATGTTACCAACATGAGGAAGAGAAATT310.15710520981147374No Hit
GCTTATGGGGGACACCGCCCTGCTCTCCATTCCTGTAATGGCTGCT300.15203729981755526No Hit
GCTAATGGGCATTTCTGTCGGCTGAGGTGACTAAGATGGAAGCGTT280.1419014798297182No Hit
CCACAGGGAGGGGAGGGAACCCCAGCTGGGTTAGAATTGGAAGGGA280.1419014798297182No Hit
TCGCGGGGTGAATCTCTGCAGTTGAATCTGACAAAGATAGAACAGT280.1419014798297182No Hit
TTCTTAGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG260.1317656598418812No Hit
GCTTCAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC260.1317656598418812No Hit
CAACCGGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG250.1266977498479627No Hit
CAGCAGGGGGTCTGGAAGACTCACAGATCGAGAAGGAACGAGATGT250.1266977498479627No Hit
TAGCCCCGGGGAGAGCAGCAGCCTGCTGACTTTGCAGTGGCTCCCC250.1266977498479627No Hit
GCTTTAGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG240.1216298398540442No Hit
ATTTTTGGGGAATTCAGAGGCTGCTGCCTGCCTGGGAGGTTGTAGA240.1216298398540442No Hit
CACTCGGGTGGAGAAGTTTAAGGAGTTAGTGCTCTGTGGAAGTGCC240.1216298398540442No Hit
CGTCAGGGGCTGGCCAGTGGGTCTCGCCTGACCGACAGCAGCAGCA240.1216298398540442No Hit
GCTGGTGGGAGGACTGGTTTGTGGGCCGCAGCAACGCCCAGGGAAT240.1216298398540442No Hit
CCTCTCAGTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCT240.1216298398540442No Hit
CACGGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGGA240.1216298398540442No Hit
GGGTATGGGGAGAGGAAAAGTGAGCTGTGCTGTGGCTCCCGCGGCT240.1216298398540442No Hit
ATGGGCGGGATGGAAAAGAGGACAGTGACATCCAAATGGGTAGTGC240.1216298398540442No Hit
TTATTTGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT240.1216298398540442No Hit
GCGCTGGGGGCTGTCGCGCAGTCCGCTCCTCCGCTGCAGAGTCGTG230.11656192986012569No Hit
CCAACAGGGAGAGTTCCGCCGCCTGGCTTGCAGTCGAGAAGCCTGC230.11656192986012569No Hit
GCTCCAGGGCTATTTAGACGCCCTACGGAGGCCTTCGGGAATCGCA230.11656192986012569No Hit
GGCAAAGGGAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGGAGCT230.11656192986012569No Hit
TCAACAGGGGAGGAGACCGCGATGGCGTTCCTGTGTCAGCGCGACA230.11656192986012569No Hit
CCTTTAGGGGGGTGCGGCCTAGGCAGTGACAACAGCTAGGATGGCT230.11656192986012569No Hit
AGAGCTGGGTGACGTGTTTATCTTGGGGCAGAGCCCAGGATAGATT230.11656192986012569No Hit
CTGAATGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC220.11149401986620719No Hit
GATAGAGGGGCTGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGA220.11149401986620719No Hit
TGCACTGGGACAGACAGCCTCCTCCATCGAGGTTGGCGTTGAGGAA220.11149401986620719No Hit
GTGGGTGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG220.11149401986620719No Hit
CTCGCTGGGGGGAACTCAAGATGGCTGCGCTCTTGCTGAGACATGT220.11149401986620719No Hit
TGCATTGGGGACCCGCGTCACCAGGAGGAGCGCACTGGAGCCAAGC220.11149401986620719No Hit
CAAAGCGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA220.11149401986620719No Hit
CACTTCGGGAGAGGAAAAGTGAGCTGTGCTGTGGCTCCCGCGGCTG220.11149401986620719No Hit
TTACTCGGGTGCTGAGAGGGAAATTGTTCGTGACATAAAGGAGAAG220.11149401986620719No Hit
CTTAATGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT220.11149401986620719No Hit
ACAGTGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA220.11149401986620719No Hit
TTACAAGGGACCCCGGGAGAATCCGCGTTGAAGAACAGAGCATTTA220.11149401986620719No Hit
GTCAAAGGGTATACAACCTGATAACATTGTTTATGTGATGGATGCA220.11149401986620719No Hit
TCGCATGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG220.11149401986620719No Hit
CACCACGGGTGGGCAGTGGGCCTGGAGCACATCAAGATGTCGACCA220.11149401986620719No Hit
GGCACTGGGGCGCCAGAGTTTGCCAAGAGGAATGTTAAGTTGATTG210.10642610987228866No Hit
CCGAGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGGA210.10642610987228866No Hit
TGGCGAGGGGGGACGCCAGGGGACGGTGAGCGAGAAGGGACAAGTG210.10642610987228866No Hit
GTACACGGGAGCTATCATGTAGGTATTTGTGTGTAATTTCAGTGAA210.10642610987228866No Hit
TGGACAGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG210.10642610987228866No Hit
CCTGCCAACTTCCCCTCCATTTCCATTTGGACTTAGCCGCAGACCA210.10642610987228866No Hit
CAGCTAGGGAGGCTAAGGACTTGTTTCGGAAGGAGCTGACTGGCCA210.10642610987228866No Hit
AAACAAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC210.10642610987228866No Hit
ATGCCTGGGTAATTGAAGACTTTGCACACAGTTCCTTCCAAATGGC210.10642610987228866No Hit
CTCCGTGGGGAGGGGACGTTTCCGGGAATGTAAGCGCTCCGGCGTT210.10642610987228866No Hit
AGATAAGGGGGCCATCCTCTGGATGTCAAGAAGGCAAAGTCCCATC210.10642610987228866No Hit
CTTACGGAGGGAGAGCAGCAGCCTGCTGACTTTGCAGTGGCTCCCC210.10642610987228866No Hit
CCATAAGGGCTTCATCACCAAAGGAGAGAAAAAGCTATTGCACAGC200.10135819987837015No Hit
ACCACCGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA200.10135819987837015No Hit
GGCACACAATTTTTCAGTCCCGTGATCAGATCCTGAATCCCAACCC200.10135819987837015No Hit
CGTTTGGGGGCACGCCGAGGGGGCGTGGCCGACGAGGTGGCAGCAA200.10135819987837015No Hit
GATATTGGGGAGAGCGCGGGACGTCTGTCTTCGAGTCCGAACGTTC200.10135819987837015No Hit
TTGTTTGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG200.10135819987837015No Hit
CTAGTGGGGGGTTTTTCGGCTGTGGTCCAGCCCGTGGCCGTCGGAG200.10135819987837015No Hit
TTTTATGGGGGTGCAGAAGGAAACCCTGCCACCAGCCTCGGGATGG200.10135819987837015No Hit
TGTAAGGGGGAGAGCGAAGTCTGTATTTTGAGGAGGTAATTGATCC200.10135819987837015No Hit
AAATCGAGGGGCTTCCTGCTTCCCAGAGGCCGGGATCCGGAGCCGC200.10135819987837015No Hit
CTTACTGGGGTCACCAATAACTCGGTCTGCAAAACCCCCCCTTGCA200.10135819987837015No Hit
GCCATCGGGGACGCGGCCTGGGCAGATCCTTGCAGAAAGCTGCAGG200.10135819987837015No Hit
CTTGCTGGGAGAGGAAAAGTGAGCTGTGCTGTGGCTCCCGCGGCTG200.10135819987837015No Hit
AAGCACGGGCCTCTGGATGTCATCCAAATGGCTTTCCATGAACGTC200.10135819987837015No Hit
TTTTGCAGGGACCATTGGAGCTAGGTGATGACTGTAGCCTGGCTCT200.10135819987837015No Hit
GTCTATGGGGAAGGGCGGCAGCAAGCGGGTGCTGCTCATCTGCCTG200.10135819987837015No Hit
TTTGCTGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG200.10135819987837015No Hit
TGCAGTGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG200.10135819987837015No Hit
ACGCGCGGGAGAGTTTGAACAGCAAGGAGAAGCTGCACACCCTGAA200.10135819987837015No Hit
CCTAAAGGGGGTGCACCCCCCTAAAGAGCTTGGTGCAGGAATTTAG200.10135819987837015No Hit
AGTAGTTGCTCAGTCCCATGAGGCTAGGTGTTCCAGCTGGTCTTCT200.10135819987837015No Hit
TTCTAAACTGACCCCATGATAGACAGAGAATGTTGTCTGGTTTTGT200.10135819987837015No Hit
GCGTTTGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG200.10135819987837015No Hit
CCGCTTGGGGCGGTCCGAGCGAGCGCGTCCTTGCTTCAAAGAGATA200.10135819987837015No Hit
AACAGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACAT200.10135819987837015No Hit
ATCTCAGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG200.10135819987837015No Hit
CGTATCGGGAGCAAGACAGAGAAGCATCAATCTGAGCAAGGAAACC200.10135819987837015No Hit
CACCAAGGGGGGCAAAACCTCGTTCCTCTTCCGCTACGCAGATGAC200.10135819987837015No Hit
TAACCTGGGGGCAGACTGGATCGCGAGCGCCGGCCGGCTCCTGCAG200.10135819987837015No Hit
TACTTAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT200.10135819987837015No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)