FastQCFastQC Report
Sat 31 Dec 2022
SRR5843394.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843394.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22498
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTACAAGGGGGTCTGGGAGGGACGTTGGAGAGTCATCCCGTATGAT360.16001422348653213No Hit
CATCAATTCCCTGCCACTATACTCCCTTGGCCTTCGACTCTGCCGA350.1555693839452396No Hit
TGTTTCGGGGGCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACAT350.1555693839452396No Hit
CACGTAGGGGCCCCAACAAAGATGGCGGCAGTGGAGAAACGGCGGC340.15112454440394701No Hit
CGAGTAGCCCGGAGCCAGCGGCTCGCGAGGGCCAAGAGGGCAAGCC340.15112454440394701No Hit
ACACTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACAT340.15112454440394701No Hit
AAGTCCGGGGGCCAGTCTTTCCCAAAGTGACTCACTGAGGACGCCA330.14667970486265447No Hit
TTGTCTGGGCCTCCCAGGGGTGAGCTGAAGCCACAAATGCAGCTGA330.14667970486265447No Hit
CCAAACGGGATCAAGCTCATTCTTTGGAGCGGGTGTGTCATTGTTT330.14667970486265447No Hit
TCCTCAGGGGGAGGTCTGCCCCGCGAGACGGACACGCCGCCCATGC320.1422348653213619No Hit
CTCGTTGGGACTGCCGGGATGGACGGCGAGCGCCTGGCGTCGGGCT320.1422348653213619No Hit
TTTGGTGGGGGAACTGGAGGGATGTCTTTCATTCTTGAGGACCAGG320.1422348653213619No Hit
GCGGCAGGGGGTCCGAGTGTCCCGCATCGGGTTGCGCGCGGTCCGG320.1422348653213619No Hit
CTCTTTGGGGAGGGCTGGGGGGCTTCTCGTTCAGGAGCTGCACTGA320.1422348653213619No Hit
CTTCTAGGGATCAAGGAAGAGGAGCGCCCCCTACCCGAGAAGGAGT320.1422348653213619No Hit
CGCTTCGGGGCCCGGTACTGGAGGGTGCAGCAAGTGCTTCCTGGAT320.1422348653213619No Hit
ATGCTAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT320.1422348653213619No Hit
TTTCCTGGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCT310.13779002578006933No Hit
TGCTCTGGGGGTGCAAAGAGGTCGGTGCGCAGCTCGCATCACGGGT310.13779002578006933No Hit
AGACAGGGGAGGTAGAAAAGGCTAAGAGAGCCTTGTCTTCTCAGCA310.13779002578006933No Hit
TACATAGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG310.13779002578006933No Hit
CATACAGGGGAGCACTCATCCCCTGGCATGTCTTAGTCTTTGTGAA310.13779002578006933No Hit
GCCCCCTCCCTGGCCTGACCTCTTTTCCTGACCTTTATGCCAGCTT310.13779002578006933No Hit
GAAAAGGGGGGACTTAAGCGCGGTGGCCTCCCCTATCCCCTACGAG310.13779002578006933No Hit
TGAAAAGGGGGAAATTCAGATGCCTGGATAGGTTCAAGTTACGTTT310.13779002578006933No Hit
GTAGCAGGGAGAAAGGGTCAGGGTCCTGAAGCAGCCGGACATCCTG300.13334518623877678No Hit
CTTGCGGGGGAAGTGAAGCTACTCCGTAACGGAGCGGTGGCGCGGC300.13334518623877678No Hit
ACCGGTGGGGGGAATTCGAGCTCTTTCGACGTTTTGAAGGAGGGTT300.13334518623877678No Hit
TGTTTGGGGATCCAAAGGCGTGGTGAGCGACAGAACGATGGCGGAC300.13334518623877678No Hit
TCTAACGGGCGATCTCTGTATGGGGGTTCATTGGGTATTACCTATC300.13334518623877678No Hit
AAAATAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC290.1289003466974842No Hit
GACCCCGGATGGTGCTGGCTGCAGCTGGAGGTGTGGAACACCAGCA290.1289003466974842No Hit
TAAGCTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA290.1289003466974842No Hit
TGTTAGGGGGGCCACTTCCTGGTGGGAAGGCCGGGCTGTCTGCGGA290.1289003466974842No Hit
AGGCCTGGTGTATGCTATGCAAATGTTCTGGTACTGAGCTACATTC290.1289003466974842No Hit
ACATGTGGGGGGGTGAGAGCGCCGAGGGCCTCAGCCGAGTCCACAG290.1289003466974842No Hit
GCAACTGCCCTTGGGTGGAGGGGAAGCTGCAGCTTCCTTTGGCCTC290.1289003466974842No Hit
CTATTAGGGGCAGATGGTACCGGGCAGTCTTGGACAGCCAAAGGGG290.1289003466974842No Hit
CCTGCAGAAACCCAAGGATGTTTAGCCTAACTGTACTGTGACACTA280.12445550715619166No Hit
ACATGAACCCCATAGTAAGGATGAGACCCCACTGTGTACCCTTCTG280.12445550715619166No Hit
GCTTCCGGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCT280.12445550715619166No Hit
TACCAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT280.12445550715619166No Hit
AAGTCAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC280.12445550715619166No Hit
GATTATGGGGTGGCGCGTGCGCGGTGCTGCTGTGGTAACGGGGCAG280.12445550715619166No Hit
CTTTGAGGGGAAGTTATCGGAAATTCACAAGGATCAACCCGGCCAC280.12445550715619166No Hit
AGTCGCGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG280.12445550715619166No Hit
GCCTGAGGGGGGAATTCGAGCTCTTTCGACGTTTTGAAGGAGGGTT280.12445550715619166No Hit
GGCTTGGGGATCCGTGAGGATGGCATGACCAGCTAGCCCCGAGACT270.1200106676148991No Hit
GCCACAGGGTCCCTCAGCCAGTAGACGATTACTTCGTAGAGCCCCC270.1200106676148991No Hit
TTCAACAGGGGGGGCGGGCCGGCTGGTGTCCCCTTTCCGGCCGGTC270.1200106676148991No Hit
TACTCCGGGGGTTCGAAGGCAGCGCCAACAAGATCGGCGTGGGCGT270.1200106676148991No Hit
TGTTCTGGGCCTCCCAGGGAAGCTGCGAGCCTCGAAGTGCGTTTGG270.1200106676148991No Hit
TACACTGGGGAGAAGCCGGAAGTTCAAGGCTGGCTCTCGCTTTAGT270.1200106676148991No Hit
GCCTCTGTTTCTCAGTTGCTCTGACAACAGGTGTGTACCACCACTC270.1200106676148991No Hit
GGTTCTGGGGGCTGGGCAGAGCGAGCAGAGCCTCGGCGGGCCACTG270.1200106676148991No Hit
TCTTATGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT270.1200106676148991No Hit
CTACATTGGGGGGAGGGGTTATCCACCTGTAGCTCTTTCAATTGAG270.1200106676148991No Hit
TGACTGGGGAAGGGCTGAAACCAAACAGCCTGTACTACTTCCGTCT270.1200106676148991No Hit
CTTGTTGGGGGCTGTCAATCAGAAAGCCCTTTTCATTGCAGGAGAA270.1200106676148991No Hit
TAGGAATGGGGGCGCAGAAGCGGGTCGGTCTGTACTCCCCGCTCCT270.1200106676148991No Hit
TGTGTGCGGGGAGAGAGAAAAAGTAAAGGACAGAAGAAGGAGACTG270.1200106676148991No Hit
GACATAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT270.1200106676148991No Hit
AACAATGGGGGCGCGAGGGGCAAGCGCACACAGGCTCCACGACTGA270.1200106676148991No Hit
GTGCGGGGACGCTCTTCCGATCTGACACCGGGGGGAATTCAGATAA270.1200106676148991No Hit
TGTTCCGGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAA270.1200106676148991No Hit
TAGTCGGGGGGAGAATGGAAAGGCTAGGTGCAGCCATGTGGTGGAT270.1200106676148991No Hit
GCTCAAGGTAGGTTGTGTATTTTGTAATATAAATTGAGATTTATTT270.1200106676148991No Hit
AGTAAAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT270.1200106676148991No Hit
TTCGTCGGGATGTTCGACAGGAACACAAAGCGGGATATAACCCTAG270.1200106676148991No Hit
CCGCTGGGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAA260.11556582807360655No Hit
GATCTTGGGGGTGGCAGCGGAGGGATAATCAGGCCGGACCTGAAGG260.11556582807360655No Hit
GCCTGGGCCTTCCTTGGCGTGATTCCGTCCTGCGCGTCTGTTCTGT260.11556582807360655No Hit
AACAAAGGGGCTGGTCGCGGAGGGGGAGGGGATGTCGGTCAGTGCG260.11556582807360655No Hit
TATCCCGGGGGGAATTCTCTAGATTACTTCCATTTCCGCCCAAGCT260.11556582807360655No Hit
TAACCAGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTG260.11556582807360655No Hit
ACTAGTGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG260.11556582807360655No Hit
ACTGCAGGGCTTCCTGGGTGAATTTGTTAAGCTACAGTTGGACCAC260.11556582807360655No Hit
GCATTAGGGGGGAATTCGAGCTCTTTCGACGTTTTGAAGGAGGGTT260.11556582807360655No Hit
TTAGACGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT260.11556582807360655No Hit
GTCTACGGGACTTCCACTCGAGCGTGAGGAGAGCGGAGCCGGAGAC260.11556582807360655No Hit
AAACTCGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT260.11556582807360655No Hit
TGTAATGGGGGAGGAAGAGGGCGGCGGCGTTCGTGGTGATTGAACG260.11556582807360655No Hit
AATCCTGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACAT260.11556582807360655No Hit
TGCTTGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAGA260.11556582807360655No Hit
GACCTTAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTT260.11556582807360655No Hit
CTTCGCACGGGGCTTCAGACCATCCAAGAAGACCCCACAGCAGCTT260.11556582807360655No Hit
GTCGACGGGACAAATTAACATATTGTTATCCTTAAAACAGCTTTTC250.11112098853231399No Hit
CACACTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA250.11112098853231399No Hit
TACGTAGGGAAGAAAGAGAAACTGGGCAGAAAGCATCACAAAAATA250.11112098853231399No Hit
TCGCAGGGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGC250.11112098853231399No Hit
CTTACCGGGAGGAGCCTGAGGCCGGGGCCTGGCTAGGCAGCAGGGT250.11112098853231399No Hit
CGAACTGTGCCCTTGAGGTTAACTCATGGATCATTCTCCCTGGCTT250.11112098853231399No Hit
AGTCCCGGGGAGACTGAGAAGGAGGACAGGAGCGGGCCGGCGATCT250.11112098853231399No Hit
GGATATGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA250.11112098853231399No Hit
GTTCATGGGGGCAGTGCGCAGGTGCGGACTTAGCTGTGCAGGCGGC250.11112098853231399No Hit
ATGCGAAGGGGATAATGAAAGCATCAGGAAAGCTTTTGTACTTAGT250.11112098853231399No Hit
GAATACGGGTCCTTGGCGTGATTCCGTCCTGCGCGTCTGTTCTGTG250.11112098853231399No Hit
CAATTGGGCGATCTTCAAGCGGGGGGAATTCAGATGTATATATGAT250.11112098853231399No Hit
AGATTGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAGA250.11112098853231399No Hit
GTAGATGGGGAAAGGGAGCAGCGGGGAAGGAGGATGGCGGATCTCA250.11112098853231399No Hit
CGCCTAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA250.11112098853231399No Hit
GTTGGGGGGACCTGGGACTGGAGGGCGGCGAACGGGCAGCAGGACC250.11112098853231399No Hit
TGTTACGGGGGGCCCACCCTCGGGTTGTAGCTATGTGTAACACACC250.11112098853231399No Hit
GCCAAAGGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCT250.11112098853231399No Hit
AGTCAAGGGACACACACTGCAGGACCGCTAGACGGACGACAACTTC250.11112098853231399No Hit
TGACGAGGGACTCTGTGCGCCTGCTCCTCCCGAAGTGCTCCTCTTC250.11112098853231399No Hit
TAAGCAGGGTCCCTGTGTACTGGTTCAGGGTTCCCTCCTAAACTGT250.11112098853231399No Hit
TAGTCTGGGGGAATTCCAGCAGCGATTAAGGCAGAGGCGTTTGTAT240.10667614899102143No Hit
CGCACTGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG240.10667614899102143No Hit
CAGTTCGGGGAGGGACATGCAGCCGGAGGACCTCAGCTTGGCCTGA240.10667614899102143No Hit
TAAGCTGGGGCGGATCAACATCTCGGAGGGGAACTGCCCGGAGAGG240.10667614899102143No Hit
GTAGCAAGATGGCCGCACCCTGTCAGACTACAACATCCAGAAAGAG240.10667614899102143No Hit
TACAGCGGGGGCGATGGATGCTGAGCCTGACTAAGAAGATGGAGGT240.10667614899102143No Hit
CTGTGGGGGCTGGTCCTTGAGCCGGCGCAGACGGCGAAGTCATGGC240.10667614899102143No Hit
CACATAGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG240.10667614899102143No Hit
CTACTGGGGGTCATCAGCCAATCAAGCACAGAGCTGAATCCTATCG240.10667614899102143No Hit
AATACAGGGACAGAAGCTGAAACCGGAAAATTCAGAGGCAGCAAAC240.10667614899102143No Hit
CTTAGCCGGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGA240.10667614899102143No Hit
AATCCTACACTACTTCGGCAGCCGAGGACACTGAAGCCATATGGGG240.10667614899102143No Hit
ATTACTGGGTGGGGTAGAACAAAGAAACTGCCTGCTGCTCCTGAGA240.10667614899102143No Hit
TCATTTGGGGAGTCAAATACATTCTCTTTGATGCACAAAACCAAGA240.10667614899102143No Hit
TGTAATGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAGACA240.10667614899102143No Hit
GGCCAGGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG240.10667614899102143No Hit
TATTGAGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG240.10667614899102143No Hit
GACTATGGGGACCCGACGTAGAGAGAGGCCTGACAGCGCCGGGCTC240.10667614899102143No Hit
GCAATAGGATGGCAGAGTACTACGAGAGCTCTAATTGTGCCATCCC240.10667614899102143No Hit
ATCCTAGGGTGGGAGAGGAACCAGAACATCATCAATGCCTGCACCA240.10667614899102143No Hit
CTAGCCGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT240.10667614899102143No Hit
GATGTGCGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGC240.10667614899102143No Hit
TCTCGGGGATGATGAAACTTTGGGTCCCTTCTAGGAGTCTGCCTAA230.10223130944972886No Hit
TCGTATGGGACTGGGGGGAGCGGAGGGAAGGAAGACAGTCACCTAA230.10223130944972886No Hit
AGCTACGGGAGAGCGCGAGAGGCGGCGGCTGGGCTGCGGGGCGCTG230.10223130944972886No Hit
CAGCAGGGGAGGCAAACGTTTAACAGTGTAGATTCTCGTCACTGTT230.10223130944972886No Hit
TTTAGTGGGGGGACTCGCGTCGCGGCTGCGGAGACTAGAAGGAGGA230.10223130944972886No Hit
CAAAACGGGGAGATTCTAAGGATCATGTCTGCGAGTCAGGATTCTC230.10223130944972886No Hit
CGTATAGGGCGGGCGTCGGCATCCAGACCGTCGGCTGATCGTGGTT230.10223130944972886No Hit
ACAATGGGGGCCTTCGGGCTGGTCCAGCAACCCGCAGGATGTCGGA230.10223130944972886No Hit
TAGGCGGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAAC230.10223130944972886No Hit
AAAGTAGGGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCA230.10223130944972886No Hit
TGCTCTGGGATCTATTGCGGGGGATCTATGCACGGGAGAGAGGAGG230.10223130944972886No Hit
TCTAAAGGGTGGACCATCAAACTGAACTGGACAGGTACCTCTAAGT230.10223130944972886No Hit
CCACTAAGATAGAAGGCCAGTCTCAGTTTCCCTAGGGAAGAGCCCA230.10223130944972886No Hit
CCATTTGGGGAAGGGGACCTTTTTGCCCTTGACCGGGACAGTTGGT230.10223130944972886No Hit
GGATGCCGGGGTTCCAAAGCCATCTCATATGTTAGTTCTCTGTCCC230.10223130944972886No Hit
TCTCTGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC230.10223130944972886No Hit
CACTTGGGGACTGACGTCAGGCGTGCTGTGCGGCTGGCTGTACGGT230.10223130944972886No Hit
CGTCGAGGGGGGTGTCAAAGCAAGGATCTTTCGCCCTTAGAAAGAG230.10223130944972886No Hit
TCACACGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT230.10223130944972886No Hit
ACCAAAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA230.10223130944972886No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)