FastQCFastQC Report
Sat 31 Dec 2022
SRR5843393.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843393.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21293
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGAGGGGGGTGTCAAAGCAAGGATCTTTCGCCCTTAGAAAGAG380.1784624054853708No Hit
TGTTAGGGGGGCCACTTCCTGGTGGGAAGGCCGGGCTGTCTGCGGA370.17376602639365052No Hit
CATCAATTCCCTGCCACTATACTCCCTTGGCCTTCGACTCTGCCGA360.16906964730193022No Hit
CTTCTAGGGATCAAGGAAGAGGAGCGCCCCCTACCCGAGAAGGAGT350.16437326821020995No Hit
AAACGAGGGGGCGAGCTCGCCGCGGAGGCCTCGGGCTGGCTGGAAT350.16437326821020995No Hit
AGTCAAGGGACACACACTGCAGGACCGCTAGACGGACGACAACTTC340.15967688911848965No Hit
TCCACCGGGTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGGAG330.15498051002676938No Hit
TGCTCGGGGGGGGCCTCCGGTGCCATGATCCGGAACGGGCACGGGG330.15498051002676938No Hit
AAGTCAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC330.15498051002676938No Hit
TAAACAGGGGTGGCTCGAAAAAACAATGGCAAGGAAGACTTGATCT320.15028413093504908No Hit
CCTGCAGAAACCCAAGGATGTTTAGCCTAACTGTACTGTGACACTA320.15028413093504908No Hit
CGCTTCGGGGCCCGGTACTGGAGGGTGCAGCAAGTGCTTCCTGGAT320.15028413093504908No Hit
GTTACTGGGGCTCTCGCCAGGCGTCCTCGTTGGAGTGACATCGTCT320.15028413093504908No Hit
TGTAAAGGGGGAGGAAGAACAGGCCTCTCTGGAAGAAGGAGAAATC310.1455877518433288No Hit
TACTCCGGGGGTTCGAAGGCAGCGCCAACAAGATCGGCGTGGGCGT310.1455877518433288No Hit
TTTGGTGGGGGAACTGGAGGGATGTCTTTCATTCTTGAGGACCAGG310.1455877518433288No Hit
ATCACAGGGGGGACACCCGGAGACGCCCGTGTCCCTCACGCAGGCG310.1455877518433288No Hit
ACTGCAGGGCTTCCTGGGTGAATTTGTTAAGCTACAGTTGGACCAC310.1455877518433288No Hit
GCAATAGGATGGCAGAGTACTACGAGAGCTCTAATTGTGCCATCCC310.1455877518433288No Hit
AAAATAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC300.1408913727516085No Hit
GCCTCTGTTTCTCAGTTGCTCTGACAACAGGTGTGTACCACCACTC300.1408913727516085No Hit
TCTTATGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT300.1408913727516085No Hit
CTCTTTGGGGAGGGCTGGGGGGCTTCTCGTTCAGGAGCTGCACTGA300.1408913727516085No Hit
TCTAAAGGGTGGACCATCAAACTGAACTGGACAGGTACCTCTAAGT300.1408913727516085No Hit
ACAGACGGGGCGCTAGAGGCCCCGGGTGGTGAACGAGGCTCCGGCA300.1408913727516085No Hit
AAAACGTGGGGCACTATAAAGATTTATTTTTGTTTTTTTTTAAAGC290.13619499365988824No Hit
TCTAACGGGCGATCTCTGTATGGGGGTTCATTGGGTATTACCTATC290.13619499365988824No Hit
CCGCTGGGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAA280.13149861456816794No Hit
GCCTGGGCCTTCCTTGGCGTGATTCCGTCCTGCGCGTCTGTTCTGT280.13149861456816794No Hit
AGCTGAGCCTGCTGGTACCCACGTCTGACAGGACCACATCCCGGAC280.13149861456816794No Hit
CTCCATGGGGACTGTCGAGTCGCGTCCACCCGCGAGCACAGCTTCT280.13149861456816794No Hit
CTTGCGGGGGAAGTGAAGCTACTCCGTAACGGAGCGGTGGCGCGGC280.13149861456816794No Hit
CACCGGGGGCGGCCAGCCCAGCTCTGCCCAGCGCAGCCAGCCCAGA280.13149861456816794No Hit
TTTGCGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACAT280.13149861456816794No Hit
TAACCAGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTG280.13149861456816794No Hit
TTCAAGGGGACACTGCAGGACCGCTAGACGGACGACAACTTCTGCT280.13149861456816794No Hit
AATCACGGGGGGAAGAGGAAGTCGTCTCCGCTGGGGCGTTGCTGTG280.13149861456816794No Hit
CCAAATGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCTG280.13149861456816794No Hit
CGCTAAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA280.13149861456816794No Hit
TAGTCGGGGGGAGAATGGAAAGGCTAGGTGCAGCCATGTGGTGGAT280.13149861456816794No Hit
GCCCCCTCCCTGGCCTGACCTCTTTTCCTGACCTTTATGCCAGCTT280.13149861456816794No Hit
CATTCTGGGGGCAGAGAGCACTCCCCATATGGTCCCTCACCATTGG280.13149861456816794No Hit
CTCAGTGGGGTAGCGGGAAGGGAAGTGGCCCCAGCGGCGGCTGGGC270.12680223547644767No Hit
GTAAGTGGGGCCCCTTTCTCTGCGGAATCACCATGGCGGCTGGGAC270.12680223547644767No Hit
TCTGGCGGGGGAGAAGCTGCCACCAGGCTGGGAGAAGCGTATGAGT270.12680223547644767No Hit
TGCTCTGGGGGTGCAAAGAGGTCGGTGCGCAGCTCGCATCACGGGT270.12680223547644767No Hit
ACCGGTGGGGGGAATTCGAGCTCTTTCGACGTTTTGAAGGAGGGTT270.12680223547644767No Hit
GCGGCAGGGGGTCCGAGTGTCCCGCATCGGGTTGCGCGCGGTCCGG270.12680223547644767No Hit
CTACATTGGGGGGAGGGGTTATCCACCTGTAGCTCTTTCAATTGAG270.12680223547644767No Hit
TCATTTGGGGAGTCAAATACATTCTCTTTGATGCACAAAACCAAGA270.12680223547644767No Hit
CTCTACGGGGGGTCCGAGCGAGCGCGTCCTTGCTTCAAAGAGATAG270.12680223547644767No Hit
CCATTTGGGGAAGGGGACCTTTTTGCCCTTGACCGGGACAGTTGGT270.12680223547644767No Hit
TGTGTGCGGGGAGAGAGAAAAAGTAAAGGACAGAAGAAGGAGACTG270.12680223547644767No Hit
ATCCTAGGGTGGGAGAGGAACCAGAACATCATCAATGCCTGCACCA270.12680223547644767No Hit
CGCGTAGGGGTGTCATCTATTTTAGGTGCAATTAATTTTATTACCA270.12680223547644767No Hit
TACTTAGGGGTTCCTCCCAGGGAAGCTGCGAGCCTCGAAGTGCGTT270.12680223547644767No Hit
CAGCGCGGGGGGGCCCCGGGCGAGGAGCGGGGCGATGCATAGGCTG260.12210585638472737No Hit
CGCACTGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG260.12210585638472737No Hit
GCATAAGGGGAACATATAAAGAAAAGAAGGCCCGCAAGAGTCTCTG260.12210585638472737No Hit
TTGCTGGGGGCCTCCCTGCTCGGATCTACATTTACCCAGACAAACT260.12210585638472737No Hit
TCATAAGGGGCGGGCGGCGGTGGCGTTGGCGGAAGGCGGTGGAGAG260.12210585638472737No Hit
CACGTAGGGGCCCCAACAAAGATGGCGGCAGTGGAGAAACGGCGGC260.12210585638472737No Hit
AATACAGGGACAGAAGCTGAAACCGGAAAATTCAGAGGCAGCAAAC260.12210585638472737No Hit
GTAAACGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT260.12210585638472737No Hit
ATCAACGGGGGATCTTACACGGGGAGCTGAGGCGGCGGGCGGCTGA260.12210585638472737No Hit
CAGTAAGGGATGGCCGACGTGGAGGACGGCGAGGAACCCTGCGTCC260.12210585638472737No Hit
CAGCCGGGAGCTTCAGACCATCCAAGAAGACCCCACAGCAGCTTCC260.12210585638472737No Hit
AGCACAGGGGCTCTTTCAAAATGGCAGCTCGAAGGAAGTTGGCAGT260.12210585638472737No Hit
ACTGCCGGGGATGAGCGACGGCTTCTCATCATGGCGGACCCTAGAG260.12210585638472737No Hit
ACAATCGGGCATCCAACTTTTGGATGATTATCCAAAATGCTTCATT260.12210585638472737No Hit
CTACAAGGGGGTCTGGGAGGGACGTTGGAGAGTCATCCCGTATGAT260.12210585638472737No Hit
TGCTCCGGGGGGAGGGGGAAGATACCCATTTCACCCCAGCGTCTAT250.11740947729300709No Hit
TTTCCTGGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCT250.11740947729300709No Hit
TCTCGGGGATGATGAAACTTTGGGTCCCTTCTAGGAGTCTGCCTAA250.11740947729300709No Hit
TACTAAGGGGAAACAGCATGGGGCCACCGCTTTCGCCGCGCGAGTC250.11740947729300709No Hit
GCCACAGGGTCCCTCAGCCAGTAGACGATTACTTCGTAGAGCCCCC250.11740947729300709No Hit
TTACACGGGGGCCGTAAGGAGTGGCACTTTTTAAAAGTGGAGCCTC250.11740947729300709No Hit
TACAGCGGGGGCGATGGATGCTGAGCCTGACTAAGAAGATGGAGGT250.11740947729300709No Hit
CACACTGGATTATTAGCATTCATTTGATGCAAGGAAGCAGCCCGAG250.11740947729300709No Hit
GAATACGGGTCCTTGGCGTGATTCCGTCCTGCGCGTCTGTTCTGTG250.11740947729300709No Hit
ACATGAACCCCATAGTAAGGATGAGACCCCACTGTGTACCCTTCTG250.11740947729300709No Hit
CTACGCGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC250.11740947729300709No Hit
GCCATCGGGTCCTTTCCTTTCAGCGGCGCGCGGCTGCAAGATGGCG250.11740947729300709No Hit
AGTCGCGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG250.11740947729300709No Hit
CATACAGGGGAGCACTCATCCCCTGGCATGTCTTAGTCTTTGTGAA250.11740947729300709No Hit
GAAAAGGGGGGACTTAAGCGCGGTGGCCTCCCCTATCCCCTACGAG250.11740947729300709No Hit
AATCCTGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACAT250.11740947729300709No Hit
GCCTGAGGGGGGAATTCGAGCTCTTTCGACGTTTTGAAGGAGGGTT250.11740947729300709No Hit
AGCACTGGCAGAGTTCCCAGACCGTGTGACACAGCACAGCCTCCTT250.11740947729300709No Hit
GTAGCAAGATGGCCGCACCCTGTCAGACTACAACATCCAGAAAGAG240.1127130982012868No Hit
CTCCCTGGGGATGCGCCGTGCGAGCGGCGCTCTGCTAGTCGAATGT240.1127130982012868No Hit
TTAGTCTGGGCAGCTTCCGGAGGCCTGGATGTGATGGCATCACAGA240.1127130982012868No Hit
AGTCCCGGGGAGACTGAGAAGGAGGACAGGAGCGGGCCGGCGATCT240.1127130982012868No Hit
AAAAAAGGGGCCCGGTAGCGACGGCGGCGGCGGCGGTGGCAGCGGC240.1127130982012868No Hit
CTGTTGGGGATGGAATTAGAGCGACTTTATCTGCAGATGTGGGAGC240.1127130982012868No Hit
TGACAGGGCGATCTCGCACCGGGTCAGAAGGCTGGCGAGCAGCTAG240.1127130982012868No Hit
TCCAGGGTATCACTTGGGCCTCGAATCATGGCTAATCGGAAGCCCT240.1127130982012868No Hit
CACATAGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG240.1127130982012868No Hit
GACTTCGGGAGACCGCAGGGATGGCGGCAGGGCAGGGTGGGTGGCT240.1127130982012868No Hit
TAGTACGGGGAGGCTTGTGCAAGATGGCTGCGGCAGTTCGGAGCGT240.1127130982012868No Hit
TACATAGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG240.1127130982012868No Hit
AACAATGGGGGCGCGAGGGGCAAGCGCACACAGGCTCCACGACTGA240.1127130982012868No Hit
GTTGGGGGGACCTGGGACTGGAGGGCGGCGAACGGGCAGCAGGACC240.1127130982012868No Hit
TGTTCCGGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAA240.1127130982012868No Hit
CTAGCCGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT240.1127130982012868No Hit
TGAAAAGGGGGAAATTCAGATGCCTGGATAGGTTCAAGTTACGTTT240.1127130982012868No Hit
CTATTAGGGGCAGATGGTACCGGGCAGTCTTGGACAGCCAAAGGGG240.1127130982012868No Hit
GAATGCGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT230.10801671910956653No Hit
CAACATGGGGAACCGGGCGGGCCCATTCCAAACTGCGGCTGTGGCG230.10801671910956653No Hit
TAGCCCGGAGCCAGCGGCTCGCGAGGGCCAAGAGGGCAAGCCTAGG230.10801671910956653No Hit
TAAGCTGGGGCGGATCAACATCTCGGAGGGGAACTGCCCGGAGAGG230.10801671910956653No Hit
AGGCCTGGTGTATGCTATGCAAATGTTCTGGTACTGAGCTACATTC230.10801671910956653No Hit
TTTAGTGGGGGGACTCGCGTCGCGGCTGCGGAGACTAGAAGGAGGA230.10801671910956653No Hit
CATCAAGGGCCGGGCCGTAGGCCTGACTCCTCAGAGCTGCTGTCAT230.10801671910956653No Hit
CAAGCCGGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCT230.10801671910956653No Hit
TCTCACGGACTCGAGCGTGAGGAGAGCGGAGCCGGAGACAAGAGCA230.10801671910956653No Hit
TCCAACGGGGCCGCAGCGTGTCTCAGTCGGTTGTCGAGTCCCTTCT230.10801671910956653No Hit
GTTTTTGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG230.10801671910956653No Hit
CACCGGGGCGATCTAATAGCGGGGGTCCGACTGCGAACTCTTCCGA230.10801671910956653No Hit
GTGTATGGGAGAGACCAGGATCCTTCCAGCTGAGCAAAGTCAGCCG230.10801671910956653No Hit
TTTGATGGGGGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTT230.10801671910956653No Hit
AGAAGGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTGC230.10801671910956653No Hit
TGTTTCGGGGGCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACAT230.10801671910956653No Hit
CACTTGGGGACTGACGTCAGGCGTGCTGTGCGGCTGGCTGTACGGT230.10801671910956653No Hit
ACACTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACAT230.10801671910956653No Hit
GTAGCAGGGAGAAAGGGTCAGGGTCCTGAAGCAGCCGGACATCCTG220.10332034001784624No Hit
CAACTTGGGAGAGAGAAAAAGTAAAGGACAGAAGAAGGAGACTGGA220.10332034001784624No Hit
CTTTATGGGGGGGTAAGATGGCAGCGGACGGACAGTGCTCGCTCCC220.10332034001784624No Hit
TTCAACAGGGGGGGCGGGCCGGCTGGTGTCCCCTTTCCGGCCGGTC220.10332034001784624No Hit
TTGGCCGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA220.10332034001784624No Hit
AGCTACGGGAGAGCGCGAGAGGCGGCGGCTGGGCTGCGGGGCGCTG220.10332034001784624No Hit
TTATGCGGGACTGTCGAGTCGCGTCCACCCGCGAGCACAGCTTCTT220.10332034001784624No Hit
GCACCAGGGTCAGGCGAGGACCAACTCCACCTCTGCACAGAAGAAT220.10332034001784624No Hit
CATACTGGGGAGTGCGGCGCCGCCACTGTCCCGCCCCAACCTCCGC220.10332034001784624No Hit
CTAGCCGGGGCCTTTTCTAAGATGGCGCAGGCGGAAGGAGCCTATC220.10332034001784624No Hit
AGACAGGGGAGGTAGAAAAGGCTAAGAGAGCCTTGTCTTCTCAGCA220.10332034001784624No Hit
ACACCTGGGCGATCTAGCATAGGGACGCTGTGACAGGCAAGGCAAA220.10332034001784624No Hit
ACATAGGGGCGGGCACTTCATGAAGGACTGTCCCATGAGGAGGAAG220.10332034001784624No Hit
CGCTGAGGGGAGACTGGAAGCGAGGCTGTGCTGCTGGGATGCCAGC220.10332034001784624No Hit
CAGCTGGGGCTTTTCGGAGCTGTGCGGCATTCTGAGCAGGAATGGC220.10332034001784624No Hit
CTACGCAGGGAGTGCGAGATCCGCTGCTGCCGAGGAGAGGAGCGTC220.10332034001784624No Hit
GCTATTGGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAA220.10332034001784624No Hit
GCTTCCGGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCT220.10332034001784624No Hit
TTGCTAGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG220.10332034001784624No Hit
TGCTCTGGGATCTATTGCGGGGGATCTATGCACGGGAGAGAGGAGG220.10332034001784624No Hit
TGGGCCGGGAGTTGGAGGCAGGCGCTCGCTGAGGCAAGAGGAGGGC220.10332034001784624No Hit
GTTATGGGGGAGTTCCAGGCATGGAGGCAGGCGGGCTGGGCTGCGC220.10332034001784624No Hit
CTTGTTGGGGGCTGTCAATCAGAAAGCCCTTTTCATTGCAGGAGAA220.10332034001784624No Hit
AAGTGAGGGGGACGTCAGGCGCGCCGCTGCGGCTCAGTGGCTCGCG220.10332034001784624No Hit
GTCTACGGGACTTCCACTCGAGCGTGAGGAGAGCGGAGCCGGAGAC220.10332034001784624No Hit
GTTTTTGGGGGTGCTAGCGGCGGACCTGCCGCTCACCGCGGTACGG220.10332034001784624No Hit
TAGCTTGGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAA220.10332034001784624No Hit
CTCTCTGGGGGACGACACAGGGGCGAGCGGCGGCGCGGTCGGCCTT220.10332034001784624No Hit
ACATGTGGGGGGGTGAGAGCGCCGAGGGCCTCAGCCGAGTCCACAG220.10332034001784624No Hit
TCAATGGGGGAGCTAGTGAAACAAGACCATGACAAGTCACCGGTCA220.10332034001784624No Hit
GCAGCTGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT220.10332034001784624No Hit
CGACTCGGGGAGCGCAGAGCGGTTTGGTCGTTCGTTGGTGGAGTAT220.10332034001784624No Hit
TTTACAGGGGGGAATTCAGATGTATATATGATGTCCTTGGACGGGG220.10332034001784624No Hit
CGACAAGGGGGGGCGACCTCTTCCTGCGTTCTCACGGCTCTTTCTG220.10332034001784624No Hit
ACAACGGGGACCAAGAAAAAAACGAACCTTTGGGTTCCAGAGCTGT220.10332034001784624No Hit
ACAGAGGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA220.10332034001784624No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)