FastQCFastQC Report
Sat 31 Dec 2022
SRR5843392.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843392.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26844
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTTAAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC380.1415586350767397No Hit
TTTTCTGGGGCACAGTTGTTTGGGAAGCGCGACAGCATGGACGACG380.1415586350767397No Hit
CCTGTGGAATTTAAGGAGCATCATCTGAGCGAGGTGCAGAATATGG370.13783340783787812No Hit
AACACTGGGGGTGTTGTCCAGCCTTCAGGACCCTCTAAAACATTAT350.13038295336015499No Hit
ACATGCGGGGAGTGGCAGTGAGTTGGGTCTTGGCTCCTAAGTGAGA350.13038295336015499No Hit
CCACATGGGCGAGTGTAACGGGGGCCGTGGTACCTGCCACTACTTC340.1266577261212934No Hit
GGGCCGGCTGCTTTGGCATCAAGGAGCAGGACATCAACAAGGATCT340.1266577261212934No Hit
CAATAAGGGACTCGATGCGGTATTTCGAGACCGCCGTGTCCCGGCC330.12293249888243184No Hit
CCGACTGGGTGACGTGCGCGGAGCTCTATGAGAAGCTACCCCAGGG330.12293249888243184No Hit
TTACCAGGGAGGCTGCGCGCCCGGTAGCCACCGCTGCGCTGTGAAC330.12293249888243184No Hit
GCAACAGGAGGAGATCCTAAGGCCCGACACCACTGATCAAGGGACC330.12293249888243184No Hit
TACGTTGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACAT330.12293249888243184No Hit
TTCTCTGGGGAGCGGGAAAAGCACTTTCAGAAGGAGGAACAGGAGA330.12293249888243184No Hit
GCCTCTGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG320.11920727164357026No Hit
TGCAAGGGGGCGGCGGCACAGAGACGAGCGCGGGTGGAGGGCGCGG320.11920727164357026No Hit
GCCAACGGGGACGAGGCGACATGGCGGCGGCGCTGCTGCTGGCGCT320.11920727164357026No Hit
TACCTTGGGGGTTGCAAAGTCTCCGGAAGTGGAGGTGTGAGAGGCC320.11920727164357026No Hit
TCGGCTGGGGATAACTGAGGCGGAAGCATAGCTTGTGGAGCTGGGC310.11548204440470869No Hit
TCGCAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT310.11548204440470869No Hit
AAATAGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTG310.11548204440470869No Hit
ATTTGAGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCTG310.11548204440470869No Hit
AAGTGTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA300.11175681716584711No Hit
CCATCGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT300.11175681716584711No Hit
GCTTAAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA300.11175681716584711No Hit
ATCTAGGGGGCTTTTTTCCCCCTTAGCGCGGCCGACTCTGCAGGTC300.11175681716584711No Hit
CACGAAGGGGCATCCTTGAAGTGTCTGGAAGGATGCTCAGCCTTGC300.11175681716584711No Hit
TGTGTTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA300.11175681716584711No Hit
TGCGCCGGGGAAAACCCAAAGTGGAGAGAGGGGAAGAAAGAAAGCA300.11175681716584711No Hit
GCCCTCTGTCAGCCCCCCTGCTGGCCCAGGTGAAAGGAAGAGGAGG300.11175681716584711No Hit
TTCTCAGGGATCCTCTAGCAGGCACTTCCTTCACTTCCTAGGGATT300.11175681716584711No Hit
GGCAATGGGACATAACAGCCAGCTGGACAGCTCTGGGGAGGCAACT290.10803158992698556No Hit
TCGACTAGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG290.10803158992698556No Hit
TGGTGTGGGGGTTTCGCTGATCTCGTTAACAGCCGGGTGGGTCTAA290.10803158992698556No Hit
TAGCAAGGGAGTGACGTCAGATTGGCGCAGGACAAAGTGTCGTCGC290.10803158992698556No Hit
AGTCGTGGGAGGAGCATGAAAAAAGGTGTTGGAGTGTTGACTTTAA290.10803158992698556No Hit
TACTTGGGGGTGCTTATCAACCCTGCTGACAGGGCCTACTCCTGGT290.10803158992698556No Hit
CACGAGGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC280.10430636268812397No Hit
ACCGTAGGGGCACAAATATCCGCCTGGGCTGTAGCCATGGCGTCCG280.10430636268812397No Hit
AACCACGGGAGTCCGCCAGTGAACCGGTCTTGAACCACTCTCCAGC280.10430636268812397No Hit
GCTACTGGGGATGTTTGGCAAGATGAAGTATAGAGATACCACTTCT280.10430636268812397No Hit
CAAGCTGGGAGGATAGGAATTGTTAGAAGTCAAGTGATAGTACCAG280.10430636268812397No Hit
TTTTATGGGGCTGAGAGACAGGGAAACGGGAGCTCACACACATACG280.10430636268812397No Hit
ACCCCAGATATAGCATTCCCACGAATAAATAATATAAGTTTTTGAC280.10430636268812397No Hit
CCCAACGGGGAACTCTTCTTCAGTCTGCTTCTTTTTTCAGGCAGGA280.10430636268812397No Hit
GAGCTGGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT280.10430636268812397No Hit
TATGTGGGGACTTAGAGACAAGTTAAACATTAATCCAGAGGATGGA280.10430636268812397No Hit
TGGTCCGGGTATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTG280.10430636268812397No Hit
GATCTTGGGCCCACCCCCGGGAGGTGCCCATCCTGATCTGGTTCTT280.10430636268812397No Hit
GGTGCAGGGGGGAATCTCGCCATTTCCAGCCTGCTACTGGATACAG280.10430636268812397No Hit
TTTGCCGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTTTTTC280.10430636268812397No Hit
CCTGTAGGGGGGAAGGCATGGAGGAGGCAAGTTAAAGCCCCTGGGA270.1005811354492624No Hit
TCTTTCGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC270.1005811354492624No Hit
GTGCATGGGGGGAATTCAGATGTATATATGATGTCCTTGGACGGGG270.1005811354492624No Hit
ATGCCTGGATCTTCTTTCTCCTTTGCCTGGCCGGGAGGGCCCTGGC270.1005811354492624No Hit
TCTTGCGGGGGAGTGTGAGCGTCGGGCACTGAAGGCCGCGGGCCGG270.1005811354492624No Hit
TTTCGTGGGGGTGTCTGTAGCGGGCGCAGGGGCAGCTGGGAAGATG270.1005811354492624No Hit
GACTCAGGGGGTAGGAGCGGCGCTTGAGGCCTGGAAGCGTTCCGCG270.1005811354492624No Hit
GCATCAGGGGTGGAAGACTGGGAGAGGAGACACTAAGTGCTGCTCA270.1005811354492624No Hit
GTGCACGGGAGACCCGGGTGGAGGAAGCGAGCGTCGCTGCCCGGTT270.1005811354492624No Hit
ACTGCAGGGATCGACATCCGGGAGTCTGATTGCCTGTGGCTGTTTT270.1005811354492624No Hit
GCGTTAGGGGGGACCGCCATGGGAGTCCGCTGTGTGGCAATCCGCG270.1005811354492624No Hit
ATAAATGGGGACGAGGCGACATGGCGGCGGCGCTGCTGCTGGCGCT270.1005811354492624No Hit
CCGGCAGGGAGAGCGCAGCCGCCCAGGCAGGAGCATCAGCCAGCGA270.1005811354492624No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)