FastQCFastQC Report
Sat 31 Dec 2022
SRR5843390.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843390.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30496
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCCGGGTCCAGTGGATTTTTTTAACTATTATTCAAAAGCAAAA780.2557712486883526No Hit
GAGCAAGGGATTCCTAGCAGAGGAGAGCCGACAGCGGTTGGCAGAG370.12132738719832109No Hit
TGCGTAGGGCGAAACCAGTATGACAATGATGTCACTGTTTGGAGCC360.1180482686253935No Hit
GCTTTGGGGGGCCCTTGACGGGCAGGCCGGCTGGGCTCTGCATCCC350.1147691500524659No Hit
TACATAGGGGAGGCGCCGAGGAGGAAGAGCGAGCCCGGACGGTGCC320.1049317943336831No Hit
CTCTCGGGGGGGTGTGTCTCAACTGGGGTGGAGATCCACAGGATGG320.1049317943336831No Hit
GCATCAGGGGGGCCCATTCCAAACTGCGGCTGTGGCGTTCTCGGCC320.1049317943336831No Hit
GCGCCAGGGGGGCAGCTCATGTTGGATGTGGAAGAAGACAGACTGG310.10165267576075551No Hit
GTCACTGTCCTCAGAAATGCCTTGCCTTTAGCCAGCGGCTCTCTTC310.10165267576075551No Hit
CTTTACGGGCATCTGGAAGCGGAGCTGGAGAAGCACATGGCAGAGG310.10165267576075551No Hit
TTTAAGGGGGGGCTGCAGATGGGCACCAACAAGTGTGCCAGCCAGT310.10165267576075551No Hit
TAACGCGGGGGGCCAGCGGGCCGGGCTGTGCACCTGCGCCTCGGCG310.10165267576075551No Hit
AAAAATGGGGTGTTCTTTATTAATATCCTAACACTCCTCGTCCCCA310.10165267576075551No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)