FastQCFastQC Report
Sat 31 Dec 2022
SRR5843389.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843389.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28737
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCCGGGTCCAGTGGATTTTTTTAACTATTATTCAAAAGCAAAA940.3271044298291401No Hit
ACAGCTTTACCACCACTGCTGAGAGGGAAATTGTTCGTGACATAAA350.12179420259595644No Hit
AAGCACGGGGGGCCACTTCCTGGTGGGAAGGCCGGGCTGTCTGCGG340.11831436823607196No Hit
GTCACTGTCCTCAGAAATGCCTTGCCTTTAGCCAGCGGCTCTCTTC320.11135469951630303No Hit
AAAAATGGGGTGTTCTTTATTAATATCCTAACACTCCTCGTCCCCA320.11135469951630303No Hit
GCGCCAGGGGGGCAGCTCATGTTGGATGTGGAAGAAGACAGACTGG310.10787486515641855No Hit
GGCCCTGGGGAGCATGACCTTGCTGGGCTGCTGAGCAACGTCTTAG310.10787486515641855No Hit
AAACTAGGGCTTGGCGTGATTCCGTCCTGCGCGTCTGTTCTGTGGA300.10439503079653409No Hit
CTTTACGGGCATCTGGAAGCGGAGCTGGAGAAGCACATGGCAGAGG300.10439503079653409No Hit
TTATCAGGGCGATCTAAAATCGGGGGGATCCGAATTGGCCCGGAGC300.10439503079653409No Hit
CAAACAGGGGGGCTTTGGCAGTGGTCATTTCAGATGCGATTCATCT290.10091519643664962No Hit
TATAATGGGGAGTTCCGTGGAGACTGCGAGTTCCGTCTGCTGTGTG290.10091519643664962No Hit
CGCTTTGGGGACACAGCAAATTCCAGTCGCTACAGCCGCCGCCATG290.10091519643664962No Hit
AAACCTGGGTTGATAGAAAAGAGCTTTTGACTGGGGTAGACAGCTT290.10091519643664962No Hit
ATCTTAGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT290.10091519643664962No Hit
CAGCTTCGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAAC290.10091519643664962No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)