FastQCFastQC Report
Sat 31 Dec 2022
SRR5843388.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843388.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29993
Sequences flagged as poor quality0
Sequence length46
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGCTGGGGGACAGCCGCCGGGGGACCCAGAGTCCGGCGCTGAGAG420.14003267429066782No Hit
CTTTACGGGTAGTTCAGATGGTCCTGTCCTCCCATCTGCTAAGGTA410.13669856299803287No Hit
AGTTTAGGGAGAAATTTTATATTTCAGTTTTAGTATTTCACAGTCA380.12669622912012804No Hit
TTCTCCGGGACGCGCGGGAGCCATATTCGCCGCGGATGCTTGGCCA370.1233621178274931No Hit
GCGGATGCCCCAGCTGCTCGCTACCAGACAATTGAAGAGAACATTA370.1233621178274931No Hit
GCATCTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT370.1233621178274931No Hit
CTTTAGGGGACCCGGGCTGGGAGCTGCGTGGAGTTAAGACTTCGAG360.12002800653485814No Hit
GCCCCTGAACATCTCCCGGGAGATGCTGCAGCAGAGCAAGATCCTG360.12002800653485814No Hit
GCACCTAGGACTGGCAGGCTCCTGCCTGGCACGCTTCAGCACCATG360.12002800653485814No Hit
AAATAGGGGGCCATTTCGTGACGCCGCGAGACCGAGAATCTGTAGG360.12002800653485814No Hit
AGGCCTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC350.11669389524222318No Hit
AATTTGGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC350.11669389524222318No Hit
CTTAAGGGGAGTCTTTCGGCGGTCGGACATGGGCACACAGCAGAAA350.11669389524222318No Hit
AGTCCAGGGGGTCCGAGCGAGCGCGTCCTTGCTTCAAAGAGATAGT350.11669389524222318No Hit
CCTAATGGGGGGAGAATTCAAGTGTGATCCCCATGAAGCAACGTGC340.11335978394958823No Hit
GCTACTGGGCGATCTTGTGTTGGGGACTCAGCTATGGAGCGGAAGT340.11335978394958823No Hit
TCTCAAGGGAGGAGGCTGAGCGTCAACGCCAGATCCAGCTGGCACA340.11335978394958823No Hit
TCTTAGGGGCTCACTCGCGCGCTCGCATCCAGCCACCTTATGATGG340.11335978394958823No Hit
CGGCCCGGGTAGATCCTACCGTTGAAAATGAAGAAACCTTCATGAA340.11335978394958823No Hit
TGTTCCGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA340.11335978394958823No Hit
CTTCCGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG330.11002567265695329No Hit
GGCCAACGTCTGGTCAGCCCAGGCTCAGCCAACGAGACCTCCTCCA330.11002567265695329No Hit
GCATCTGGGGACCAGGTGTGCAAGAGCGGAGTGTGTGTGAACACGG330.11002567265695329No Hit
CTATGTGGGGGTGAGAGTGTTCTGATCATTTCCACAGACCCAGCTC330.11002567265695329No Hit
ATTAGTGGGATGTAACGCATCGTCCAGTAACTCAGGTGACCACAAG330.11002567265695329No Hit
TCGTATGGGGGCAACCATGGCTGAAGAACAACCTCAGGTCGAACTG330.11002567265695329No Hit
GAGACTGGGAGTCGGATCCCGGCAGCAGCTGCGGCGGCTCAGGTCT330.11002567265695329No Hit
AACCCTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA330.11002567265695329No Hit
CTATACGGGGAGCGGACCGGCGCAAGCGGCCGACCGGCCTCGGGCC330.11002567265695329No Hit
TGAGACGGGGAAGTTGGACAGCGCTGCCAAGGATGCAGACGAGCGA330.11002567265695329No Hit
CTCCTGGGGCCACCTGAGCTGGCACCATTTGTGGGGCGGATGTCTG320.10669156136431834No Hit
CTGTTAGGGGTACCGGCCGCGGCGGCGCAAGCAGGTGAAGCGCATG320.10669156136431834No Hit
CTCATTGGGCCCGGCCGCGGTGACTCACGGAGAGGCGGAGGCTGAG320.10669156136431834No Hit
CGCTATGGGGTCTCCAGCCAATGAGATGACACCAACCAGATTCGCT320.10669156136431834No Hit
CATCTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT320.10669156136431834No Hit
AGCAGTGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG320.10669156136431834No Hit
CTAGTAGGGGGAGGCGACATGGCGGCGGCGCTGCTGCTGGCGCTGG320.10669156136431834No Hit
CTATATGGGGAGGAACGTGCAATTACTACGCAAATGCTTACAGCTT320.10669156136431834No Hit
ATGCTTGGGACAACTACATTTCATGAATTATATTTCACAATTATTG320.10669156136431834No Hit
GGCACTGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT320.10669156136431834No Hit
CTTTCAGGGGTTCCTTTTCGCCTTCCAGCTCCCCACCGCCCCCTGG320.10669156136431834No Hit
GGCACAGGGACTTCTGGGATGCGGTTCCTCCTCAACCAGCAGATCT310.10335745007168338No Hit
TGTTATGGGAGAGGAGTGGAGCCGGCAGCCGAGTAGGACCGAGCTG310.10335745007168338No Hit
TATACAGGGGTGGATGTGAACTCGCAAAATGAGGTCAACGGCTGGA310.10335745007168338No Hit
GTCTCAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT310.10335745007168338No Hit
AGGTTTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC310.10335745007168338No Hit
AACAATGGGGGATGCCATGATAAAGGTCCTGCAGCAGCGATCCCGT310.10335745007168338No Hit
AGACCGGGGACTTTGCTTGTGCAGGGCCCAACTTCTAAAAGATCCG310.10335745007168338No Hit
GCTCAAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA310.10335745007168338No Hit
AATTTTGGGACAGCCTGTGAAGGAACAACTTGCCCAAGCTATGTTT310.10335745007168338No Hit
TTATTTGGGCATTTCATGCCAACCAGTTGGCACCGACGAAGAGCCC310.10335745007168338No Hit
GCTTCTGAAGCCCATAGACTCCACAGACCCCACAGACCCCACCTGA310.10335745007168338No Hit
GTATAGGGGGGGGTGGTGCGTGTGCACAAGTAGGTCACGTACCTAA300.10002333877904845No Hit
CAGCCTGGGGGTTCCTTTCGGGTCCTTCCGGCGTCGCCGGAGTGAA300.10002333877904845No Hit
GTCTTCGGGAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATG300.10002333877904845No Hit
TCTCACGGGGGGTTCTAGGAAGATGGCGAAGGTCACTGAGCGTTAC300.10002333877904845No Hit
AAGAACGGGAGAAGTCTCAGGTGGGCTTCATCGACTATATTGTTCA300.10002333877904845No Hit
GCATAACGGGGGGGAATTCGAGCTCTTTCGACGTTTTGAAGGAGGG300.10002333877904845No Hit
CAACTCGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA300.10002333877904845No Hit
GCGCTTGGGGGACGAGGCGACATGGCGGCGGCGCTGCTGCTGGCGC300.10002333877904845No Hit
GCTAGAGGGGAACATGGTAGATAAAGATGTTAGGGATGGAGTTTCA300.10002333877904845No Hit
ACTCTTGGGGCTGGTGGGAAGGCCGGGCTGTCTGCGGAGCTCGCTG300.10002333877904845No Hit
AGTTTTGGGGGGTGGATTCAGGCAACCCTACCCATCCTCACTGTCA300.10002333877904845No Hit
GGACCGACTAATGCCATCTTCAAAGCCTTTGCTATGATCATTGACA300.10002333877904845No Hit
CTTCTAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC300.10002333877904845No Hit
TAGACAAACTGAAAGCTGAGCGTGAGCGTGGTATCACTATTGACAT300.10002333877904845No Hit
TGCTAAGGGGAGCCCGGGGAGGGCAGCGCGGCGAGAACCCACCCGC300.10002333877904845No Hit
ACAAAAGGGGCCTGTGGAAGACTGGGAGAGGAGACACTAAGTGCTG300.10002333877904845No Hit
TTCAACGGGTGGGGAATGGGAGAGAGAAGGAGCCTGGACTGTGATA300.10002333877904845No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)