FastQCFastQC Report
Sat 31 Dec 2022
SRR5843387.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843387.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28599
Sequences flagged as poor quality0
Sequence length46
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACAATGGGCTACCGGGACAAGCCCATAGACTGGCTCCTGGACCAC430.15035490751424876No Hit
TACCTTGGGGACAGTTGTTTGGGAAGCGCGACAGCATGGACGACGA410.1433616560019581No Hit
TCTTACAGGGGCAGTTGGTGTAGTTAAAACCTCCTCTTCTGCTCCA400.1398650302458128No Hit
GCTACTGGGCGATCTTGTGTTGGGGACTCAGCTATGGAGCGGAAGT390.13636840448966747No Hit
AATTTGGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC380.13287177873352213No Hit
CCCTCAGGGGGAAGGGCAAGGAGGAAAAGGAGGGCGGCGCGCGGCT370.12937515297737684No Hit
ACTGAGGCAGGACAGTACAGTCAACTTTACTCCCAGTGATTCAGTT370.12937515297737684No Hit
GACGGGGTCACACACACAGTGCCCATCTATGAGGGCTACGCCCTTC370.12937515297737684No Hit
TAAGCAGGGGGCATGAGTCTGAGTTCCAGGCATGGAGGCAGGCGGG370.12937515297737684No Hit
ACATACGGGGGCGCTGGGCTAGGGAACCGGCTCCGGTGGGATGGAG370.12937515297737684No Hit
CTGTTAGGGGTACCGGCCGCGGCGGCGCAAGCAGGTGAAGCGCATG360.1258785272212315No Hit
GCATCTGGGGACCAGGTGTGCAAGAGCGGAGTGTGTGTGAACACGG360.1258785272212315No Hit
AGTTTAGGGAGAAATTTTATATTTCAGTTTTAGTATTTCACAGTCA360.1258785272212315No Hit
CAAATTGGGACAGTTTCGGGACCCCGGCCCTTCCAGACGTTCGTGG350.1223819014650862No Hit
GCCCCTGAACATCTCCCGGGAGATGCTGCAGCAGAGCAAGATCCTG350.1223819014650862No Hit
AGCCAGGGCTACATAGAGAAATTCTGTCTTGAAAAACCAAAACCAA350.1223819014650862No Hit
ACAGCTGTACAGCAGGGGTCTCATTTCTGTACCAGCATGTCTAATG350.1223819014650862No Hit
CTGCACGGGGAGATGTTGGGGCGGCAGCGGCGGGAGCTACCGAGAG340.11888527570894088No Hit
GCAAAAGGGACTTCAACGAGCCACCCCTCAAAGCTATGAAGATGAT340.11888527570894088No Hit
AACAATGGGGGATGCCATGATAAAGGTCCTGCAGCAGCGATCCCGT340.11888527570894088No Hit
TAGATAGGGGCCATCCGAGTGAAGCGCGTGGTGGACAAGAAAAGAC330.11538864995279555No Hit
ACGAGGGGGGATCAGAAATGTCGCCGCCCGCCGGCGGTGCGGCAGT330.11538864995279555No Hit
CTGTCCGGGGTGACCCAACTCTGACCATGTGTACAAGTGTACAAAT330.11538864995279555No Hit
ATTATTGGGGGAATTCACTGTCCTTTCATCCATAAGCGGAGAAAGA330.11538864995279555No Hit
TGATATGGGCGATCTAATGCCGGGGACAGAGGAGTTCTTTGACCTC330.11538864995279555No Hit
CTTCCGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG320.11189202419665024No Hit
TCTTAGGGGCTCACTCGCGCGCTCGCATCCAGCCACCTTATGATGG320.11189202419665024No Hit
TGTTGTGGGGAGCTGGTGGGCCGGAGCGGCGGCGCCGCCATGTCCG320.11189202419665024No Hit
TCTGCTGGGGACAGTGATAGTGCAAAACCCAGAATGGATGTCCTCT320.11189202419665024No Hit
TCGTCAGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACATG320.11189202419665024No Hit
TCAATGGGGGGATTGAGCCTTCTGCATCCTTGGTCCAGTGGTTCTG320.11189202419665024No Hit
ATGCTTGGGACAACTACATTTCATGAATTATATTTCACAATTATTG320.11189202419665024No Hit
CTATACGGGGAGCGGACCGGCGCAAGCGGCCGACCGGCCTCGGGCC320.11189202419665024No Hit
ATGTATGGGGGGGAGGAGATTAAAATGCTAGTTAAGGGAATATCTG310.10839539844050491No Hit
CAACCGGGGAAGCACCGTGCGCACTGACATCAGCGTGGGCAGGACT310.10839539844050491No Hit
TCTGCCGGGAAGCGCACGACGTGCGCGCGCCCTCTGCCTCGTCCAC310.10839539844050491No Hit
ACGCAAGGGGGAGATGGGTGTTACGAGCTGGTGGTAGGATACACAG310.10839539844050491No Hit
GCGGATGCCCCAGCTGCTCGCTACCAGACAATTGAAGAGAACATTA310.10839539844050491No Hit
CGCTATGGGGTCTCCAGCCAATGAGATGACACCAACCAGATTCGCT300.10489877268435958No Hit
GGCACAGGGACTTCTGGGATGCGGTTCCTCCTCAACCAGCAGATCT300.10489877268435958No Hit
GCTTTCGGGGGTGCGCACTGAGGGTCCACGCAGCCTCTACAATGGG300.10489877268435958No Hit
TCGTATGGGGGCAACCATGGCTGAAGAACAACCTCAGGTCGAACTG300.10489877268435958No Hit
TGTCGAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT300.10489877268435958No Hit
ACGCTGGGGGACAGCCGCCGGGGGACCCAGAGTCCGGCGCTGAGAG300.10489877268435958No Hit
AAGTAAGGGGGACGCAACCATGGCTGAAGAACAACCTCAGGTCGAA300.10489877268435958No Hit
AACAGCGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT290.10140214692821428No Hit
CTCCTGGGGCCACCTGAGCTGGCACCATTTGTGGGGCGGATGTCTG290.10140214692821428No Hit
ATGCCCGCGGCCAAGAAGCAGAAGTTGAGCAGCGACGAGAACAGCA290.10140214692821428No Hit
CACTGCGGGGGAGGCGACATGGCGGCGGCGCTGCTGCTGGCGCTGG290.10140214692821428No Hit
CGTCACGGGGGGCTTTCTGCGCGGGCGGCATGGAGGAGCGCAGCGA290.10140214692821428No Hit
CAATCCGGGGTATGGGACACATTTCCAGCAAGAGCAGTGATAAACT290.10140214692821428No Hit
ACGTGTGGGGGGAGCTGACTGGCCAATCACAATTGCGAAGATGAAG290.10140214692821428No Hit
TACAAGGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT290.10140214692821428No Hit
CGGCCCGGGTAGATCCTACCGTTGAAAATGAAGAAACCTTCATGAA290.10140214692821428No Hit
TAGTCTGGGGAAGGAAGGGCCCAGGAGCTGTCCAGAGCCCCCTCTT290.10140214692821428No Hit
TTCTCCGGGACGCGCGGGAGCCATATTCGCCGCGGATGCTTGGCCA290.10140214692821428No Hit
TTCAACGGGATGACATTAATGGTGATAAAACTGTTTCTTCTGCACA290.10140214692821428No Hit
TAATGGAGGGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAA290.10140214692821428No Hit
GCATACCGGGGCCCATGTGTCCTCATAAGATGGAGGCAGAGGAACT290.10140214692821428No Hit
TGTCTGGGGATCTTTTAGGGCTGTTAATTTTATTTTTCTCAGTGTT290.10140214692821428No Hit
ATACGCGGGGGAATATTCCTGCATCTTCCTTCCTGAGCCTGTGGGC290.10140214692821428No Hit
TGGCATGGGGCTAGCACGCCTTGGTAAACCTAGGCTCAACTCCCAC290.10140214692821428No Hit
TAGTCTGGGGAGGACACCATTGATGTATTCCAGCAGCAGACAGGAG290.10140214692821428No Hit
ACTCTTGGGGCTGGTGGGAAGGCCGGGCTGTCTGCGGAGCTCGCTG290.10140214692821428No Hit
AGGTTTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC290.10140214692821428No Hit
CTTCTAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC290.10140214692821428No Hit
AACTCCGGGTTAATTCTTGAGGAAAAAGCTGGAAAACAGTAGCAAC290.10140214692821428No Hit
TGCTAAGGGGAGCCCGGGGAGGGCAGCGCGGCGAGAACCCACCCGC290.10140214692821428No Hit
TTATTTGGGCATTTCATGCCAACCAGTTGGCACCGACGAAGAGCCC290.10140214692821428No Hit
AAGCCTGGGGGCTCTCGAGGGCGGCGGCCCAGGGTGTCCCGTCGGT290.10140214692821428No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)