FastQCFastQC Report
Sat 31 Dec 2022
SRR5843382.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843382.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36185
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTTGGGGATCACAGAACAACCGCCGCATACGGCCGATTGTCGC540.14923310764128783No Hit
GCAACAGGGGAACACCCTGTCTCTTCCTGCTTTGGAAGCTGGGAAG470.12988807516926903No Hit
CAATCAGGGATGAAGATGGTACCATCAGGATCTGGGACCTCAAGCA470.12988807516926903No Hit
AATGCAGGGAAAGTTGGACTCAAAACAGGAACAAAAATGAATTGTG420.11607019483211274No Hit
CATCCAGGGGAAGATTCAGCCAGCGGCTTCTTGTAAGGTGCACGGG420.11607019483211274No Hit
CTCAGGGGATCGAAAAATAGAAAACATCCACATAGGGGGGAAAGGG410.11330661876468151No Hit
TTGCACCGGGAGGGTGGAGCCAGCAGGGCAGGAAGCATCATCACAA390.10777946662981898No Hit
AACTATGGGATGGACAGCTTACCTTTGGATTCAAACAGGTATACAG390.10777946662981898No Hit
TATTGTGGGAGGGAAGAGATCCCCTCCAAGTAAAAAAGGAGCCACA390.10777946662981898No Hit
CGTTTAGGGGTTTAAAACGATGTCCACTGTTGCTAAGCATGTCCTT390.10777946662981898No Hit
CTTACAGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG390.10777946662981898No Hit
CAAATTGGGGTACACTCAATTTCAGAAACAATGAAAACCCAACACT380.10501589056238773No Hit
AAGTTTGGGGGGGAGGACCAGCTGCTGCAAAGACTGACTGTTTCTC380.10501589056238773No Hit
TCAGCAGGGGATCCGAGGGCAGAGGAAAGGCGCGGGTTCTGTTTTC380.10501589056238773No Hit
ACGCTTGGGGCCCAGGAAGAACTTGTGTTGCATTGGCTGTGAGAGC380.10501589056238773No Hit
GTAGCGGGGGGACGTCAGCTCAGCGAGGTGTTCATCCAGCTCCCCT380.10501589056238773No Hit
TAAGTGGGGGACCCCATAGACTTTTCCAATAGCCCTGAAGCACTTC380.10501589056238773No Hit
TGTACTGGGGATGAAGCCACCTTAAGACCCACATGTGAGAGTGCAC370.10225231449495648No Hit
CTAAGTGGGATAGTAAGGCAAAACCAAACCAAACCAAACCAAACAA370.10225231449495648No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)