FastQCFastQC Report
Sat 31 Dec 2022
SRR5843381.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843381.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34353
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATTTTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT410.11934911070357757No Hit
TAAGTGGGGGACCCCATAGACTTTTCCAATAGCCCTGAAGCACTTC400.11643815678397812No Hit
CTATCCGGGGCTTGCCTTACCCTATTCCCGCACAGGGGCTGACATG390.11352720286437867No Hit
TGTACTGGGGATGAAGCCACCTTAAGACCCACATGTGAGAGTGCAC390.11352720286437867No Hit
GCCAGGGTGGCATGGTTTTCACAAGGTACACGTGTCACGTGTTTGT390.11352720286437867No Hit
TGCAAAGGGATTTTCCCACACCTCAGCCTCCTGTCCCCGTCCTGGT390.11352720286437867No Hit
CAAGATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC380.11061624894477921No Hit
CGTTTAGGGGTTTAAAACGATGTCCACTGTTGCTAAGCATGTCCTT380.11061624894477921No Hit
CGGTCTTACCTGGGAACCTGGCATGAAAGCTCAGGGCCAGCCTCCC380.11061624894477921No Hit
CTTACAGCGGGGTGCTTTGTGCAGTACCAAACACAGAAAGTATGTA380.11061624894477921No Hit
CAATCAGGGATGAAGATGGTACCATCAGGATCTGGGACCTCAAGCA370.10770529502517975No Hit
AACTAGGGGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTG360.10479434110558031No Hit
CTCGCCGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG360.10479434110558031No Hit
GAGCTAGGGAATGTCAGGGTCATCTCCAGCCTTTAGGGGACAGACC350.10188338718598086No Hit
TAAGCAGGGCAGCCTCAGGATCTTGAGTTTACCAAATTACCAAATG350.10188338718598086No Hit
TCTTTGGGGATCGAATGGAAGGCCCATCTTCATTTTCAGAAGATGG350.10188338718598086No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)