FastQCFastQC Report
Sat 31 Dec 2022
SRR5843378.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843378.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33025
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATACGGGGGCGCAGGGACATCAGCGAACGAGGCCGGGACATTGAG390.11809235427706283No Hit
GGTGCAGGGGAGGCCTCAGAACCAGCTTTGGACCTGCTCCCAGAAC390.11809235427706283No Hit
ACACAAGAGAACACCTTCTCCATGGACCCGCAGCTGGAGCGACAGG370.11203633610900833No Hit
GGCTGTGGGGTTGGTTGGTTCGAGTTGTCTAGCCATTGGTTGGGTG360.10900832702498107No Hit
AGCAATGGGGACGCGAATTGGGGACATTCAAATGAGCATCCTAGTC350.10598031794095382No Hit
CCATGAGGGAACTCCTCAGAGGATTATATTCATCGAATTGGAAGAA350.10598031794095382No Hit
TCTCCAGGGGAGTTGCAGCTAGTTCTTACCTGCAGAACGCAAGCGG350.10598031794095382No Hit
ACATTGGGACCCAGGATGAGGTTGCTGCTTCTGCCATCCTGACTGC350.10598031794095382No Hit
ATCATAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT350.10598031794095382No Hit
CTAAACGGGGGATTTAGGAGAGGAACTCAGAAGGCCCTTAGGATGA340.10295230885692658No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)