FastQCFastQC Report
Sat 31 Dec 2022
SRR5843377.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843377.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31482
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTGTAGGGGAAGTCTGTGACCTGTTGCATGCAGCTCCTTTCCAGA370.11752747601804206No Hit
CTTGAAGGGGCTGGATGTGTGCTGCCCGCAGTGCGATGTCCTGGCC360.11435105774728416No Hit
TCACCAGGGATCCATTGCCTGAATTTGCCAAAGAGCCACCGCAGAG350.11117463947652627No Hit
AGCAAAGGGGAGGGGCGGTTGGCTTTGTTGGGTGAGCTTGTTTGTG350.11117463947652627No Hit
AGGCGAGGGATACCAATGTTTAAACTTAAATTGGGTGTTAGCTTGA350.11117463947652627No Hit
ACGACGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACATG350.11117463947652627No Hit
CGGTCTGGGGGTTTTAAACTTGTCAGTCTTCCTCAACTGCTTGAAT350.11117463947652627No Hit
CAGTTTGGGAAACACACAGACCCGAGGCTGTAAGGTGAACGCGTGT350.11117463947652627No Hit
ACCGCGGGAGATTCCAGGTGGACATACACAGAACCAAACCATGAGT340.10799822120576838No Hit
GGCCATGGGGTGCCATCCCATCACAACAAGGTATCTTTCCTAAAGG340.10799822120576838No Hit
CAGTAAGGGCACAGAACAACCGCCGCATACGGCCGATTGTCGCAGC320.10164538466425259No Hit
TACGGTGGGGGGGAACAAAAATCCTGTGGCAAAGAACATCTTGTAA320.10164538466425259No Hit
GGCTGTGGGGTTGGTTGGTTCGAGTTGTCTAGCCATTGGTTGGGTG320.10164538466425259No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)