FastQCFastQC Report
Sat 31 Dec 2022
SRR5843375.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843375.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42760
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGCAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA560.13096351730589337No Hit
CTCCCCGGGTCCAGTGGATTTTTTTAACTATTATTCAAAAGCAAAA520.1216089803554724No Hit
GCAACTGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT470.10991580916744621No Hit
CACTTCGGGGCAGTCGGATCCCGGCAGCAGCTGCGGCGGCTCAGGT450.10523854069223575No Hit
GAAAAGGGGGAGTGTGCAGGCCACAAAGACTCTGTGACATGCGCTG440.1028999064546305No Hit
CATCCAGGGTCTCCTGTTAACCAGGCTGACTTCGAACTCACAACCT430.10056127221702525No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)