FastQCFastQC Report
Sat 31 Dec 2022
SRR5843356.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843356.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49681
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCAGACAGTAGAATGTAGGGAAAAGCTTTTGCCCGATGGATTTT850.171091564179465No Hit
ACATCTGGGAGGCTGGAGGGGACCAAAAAGGGACACCAACTGCAGC770.15498882872728006No Hit
AGCATCGGGAAGATGGCATTGACCACAGTAACATTGGCAACAAGAT750.15096314486423382No Hit
ATCTTTGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG710.14291177713814132No Hit
GCGTCCGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT710.14291177713814132No Hit
ACGCCAGGGATGCACAGACCTGGTCAATCTTTGGCTGATTGAAAGA700.14089893520661823No Hit
TATTCAGGGGGGCATGCGCATGCAGCACAACCTGGAGCAGCAGATC700.14089893520661823No Hit
TCAGAAGGGCTGGCCTGACCTCTTTTCCTGACCTTTATGCCAGCTT700.14089893520661823No Hit
AAGCATGGGGGGAGCCCGAGCAGCGGCCGCCCTTCGCCCAGCTTCA690.1388860932750951No Hit
CAACTGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAGT690.1388860932750951No Hit
TGTTCTGGGGGTGCTCCCCAGCAGTTCCCCTACCCACCAAACTATG650.13083472554900263No Hit
GCTCATGGGTACGGCCGATTGTCGCAGCCCGGGTCGATTATAACAA650.13083472554900263No Hit
TTGCAGGGAAATCAGGGCAAGATCAATGCCTGGACGGCTCAGAGCA640.12882188361747954No Hit
TCGCTCCGGGCGCATTATAACCTGTGAATTAAGCCGTCTGGCTTAT640.12882188361747954No Hit
CTTTGTGGGGGCTCAGAGAAGTTAACTCTTTCAAGGTCACACAGTA640.12882188361747954No Hit
TTACTTGGGCACCATCCCCATCACAGCAGAAGTTTTCAAGAAGCAC640.12882188361747954No Hit
GTAGATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC630.1268090416859564No Hit
CAAATGGGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCA630.1268090416859564No Hit
ATCGTGGGGGTAGAAAGCGAAATCAGAGGAGATGTAACCATAGGCC630.1268090416859564No Hit
AGACTTGGGACCCCAGTCACTAGAAAGACTGTCATCTAACCTCTGC630.1268090416859564No Hit
CGAACTGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG630.1268090416859564No Hit
TGCATCGGGCGATCTTTACCCGGGGCTCCTTGGATTCTGAGCCCGG630.1268090416859564No Hit
CTATGTGGGGGGCACGGGAGACGGCGGCTGAGCCGCGGCAGGAGAG630.1268090416859564No Hit
CTATTTGGGGTAAGACCTGGTGGGCTGGCTCAGTGGGACTTGGCCC620.12479619975443329No Hit
AATGCAGGGGGGGCTGGTCCAGCAACCCGCAGGATGTCGGAGGTGC620.12479619975443329No Hit
GCAATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC620.12479619975443329No Hit
GACGCTGGGAGTCTGAGGCAGGTGCCCGACATGGCGAGTGCTGTGC620.12479619975443329No Hit
CAGCTGGGGAGACTGGGAGACTCCCCCAAAAGGTAAAAGCTACCAA620.12479619975443329No Hit
GTAGCAGGGGGGGTTACTCAAATATACCCCATCTAACCTGACATTT610.12278335782291018No Hit
TGTGCTGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG600.12077051589138704No Hit
TGTATTGGGCTGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAA600.12077051589138704No Hit
CTAATCGGGGGGAGCCGCTGCTGCTGTCGCGCAGTCCGCTCCTCCG600.12077051589138704No Hit
TCTCTTGGGGAGATTTAGCGAGACCGAGGACGCAGGCGGAGCGGGC600.12077051589138704No Hit
ATCAGTGGGGAGATGGATGTCCCTCTGCACTGCCGGACAGAATTTT600.12077051589138704No Hit
CACTCCGGGGCAGGTCCAGCATGCCAGCAAACAGATCAGTGCAGAG590.11875767395986393No Hit
CTTTCAGACGCTACTTGGGGGGCAGGGAGAAGATGTTGGATTGCTC590.11875767395986393No Hit
ACTTGGGGGGCTCTTTCTTTTTCTCCACAGGGTCGTGGTGGCAGCC590.11875767395986393No Hit
CTTCCAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA580.11674483202834081No Hit
AACATGGGGATCATTGCTGGAGTGGCATTTGGAATTGCGTTCTCCC580.11674483202834081No Hit
ATACAGGGGGGACTAGAGCCGGCAAGATGGCATCCAGTGACGGGAA580.11674483202834081No Hit
CTCAAAGGGCTCGCATGATATGTATTGCGCTCAGATGCTGGAGATA580.11674483202834081No Hit
ACGTATGGGGGGAAGCAGTTCCTCGGCCTGTGACACGTAGCAACAG580.11674483202834081No Hit
ACTCAAGGGGGCTCAATCCTCACATTCTAGCCATAGACAAACACCA580.11674483202834081No Hit
CTTTCTGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG580.11674483202834081No Hit
GCTCTGGGTATGCCACAACTAGATACATCAACATGATTTATCACAA580.11674483202834081No Hit
GTGTGTGTGTGTGTGTTCTAACTCTAAAGTTCTAAGGCAGTGCTTC570.1147319900968177No Hit
GTTCCTGGGGGCCACTGCCGAGCGTGGGCACGGGAGGCTCTCGCAA570.1147319900968177No Hit
AATTTGGGGGGGTGGGAGCCGCTGCGGGCGCGGCACTGCAGCCCTG570.1147319900968177No Hit
CTGATAACGGGAGGATCGCGACAGGGAAGTGGTGATGTCGCGGTGG570.1147319900968177No Hit
CTAACTTTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATA570.1147319900968177No Hit
TGCCCTGACCGGCTGGAGACTGAGATGCAGGAGCTTGCCATTCAGT560.11271914816529459No Hit
ATCCGTGGGTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGA560.11271914816529459No Hit
ATCACGGGGGGGAATTCAGATGTATATATGATGTCCTTGGACGGGG560.11271914816529459No Hit
AATGCGGGGGCCGATTGTCGCAGCCCGGGTCGATTATAACAACGGT560.11271914816529459No Hit
TTTGCTGGGGTTACTTGCTCTTGTGGATTTTGTGCATGCCCTTTGA560.11271914816529459No Hit
TTAGCAGGGGTTCTTCCTCCTTGTCGGGAAAGCAGAGTTTGAGATG560.11271914816529459No Hit
GCAAAGGGAGGTCTTGGAGTGTAGCCGTTAAGCCATCTTGTAACCC560.11271914816529459No Hit
ACTAAGGGGCTTCCTTATGTCCCGCATTAAACAGCACTCAGCATCT560.11271914816529459No Hit
GCTGGCGGGGACTGGCCTATGTGTGCTGCGTCCGGCAGCTGGAGAT550.11070630623377145No Hit
ACGACGGGGGTAGTCAGTGAGCTTTGCGATTGCCTCAGCAAGTGTG550.11070630623377145No Hit
AAACTCGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC550.11070630623377145No Hit
CTTAATGGGCCTTTCGGCTATATAGGAATAGTATGAGCAATAATGT550.11070630623377145No Hit
TGCTGCGGGGATCCCGGCCTGGGTGTCTCTGCGGGCGGAGTGAGCG550.11070630623377145No Hit
TCCGTGGGGGGGCGCTACACATACAGTAAGCAGCCCCAGGTATGCA550.11070630623377145No Hit
TACGTGCGGGTTGCCATCTGAAGGGCTGTTTTGGGAACAGGTGTCA550.11070630623377145No Hit
CCATGTCGGGGTTCAAACGCATTGGGGACTTGCAAGCTGCCATTGA550.11070630623377145No Hit
TCGCCCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA540.10869346430224834No Hit
ATCCGTGGGGAGTGAGTGTGTACCGTGTTAACGGCTGTTGCTCTCC540.10869346430224834No Hit
GTAATTGGGGCCCCCAGCCTCTTCTCGATGGACTTCCTGGATGGAC540.10869346430224834No Hit
CGTCCAGGGCATGCAGAAGAGTCTAAAAAAATCCAAGCCCAGCTGA540.10869346430224834No Hit
GCGTATGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT540.10869346430224834No Hit
GTCAGAGGGGCTGCACACAGGTGACATGGGCCGCCTGGATGCTGAC540.10869346430224834No Hit
CTGACTGGGGGACCCTTTTCCGGTCCGGGCTGCCCGACCGCTCTTG540.10869346430224834No Hit
CACATAGGGGACAATCTTTGACAATTTCCTCATCACCAATGATGAG540.10869346430224834No Hit
TCGACTGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG540.10869346430224834No Hit
CGAACTGGGGTCAGTGTAGATGGTAAAACTCTCACAGAAAAAGGAA540.10869346430224834No Hit
TTACAAGGGGAGAGCCGGAGTCTGCGATCCGCAGAGCAGCAGCCTG540.10869346430224834No Hit
TTTACTGGGGCTGGAGCCGGGTGTTCCGGCCGCGGTCGGTGCAGCT540.10869346430224834No Hit
GCACGCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA540.10869346430224834No Hit
TGCCGCGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT540.10869346430224834No Hit
AGCGGGCCAGTAGCTCCGTGTCCCGCCCGCCCTAGCCATGCTGTCC540.10869346430224834No Hit
TATACGGGGAGGCGAAGCTCGCGAAGCAGAGGAACATGGACGTGAA540.10869346430224834No Hit
ATAGCTGGGCCAGGAGCCATGGCGTCTTATTTTGATGAGCACGACT540.10869346430224834No Hit
GACACCCTCTTCTGGACTTCAGGAGCCCTGCATGCATGGAGTCCTC540.10869346430224834No Hit
GAGCAAGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAAC540.10869346430224834No Hit
TCTTCAGGGGGGCGGCGGCGGCGGCGGCGTGGACCAGTTCTAGCCG540.10869346430224834No Hit
GCATCTGGGAGGAGAGAGAGAGTAAGGAGCCAGCCATGAATCCTTT530.10668062237072522No Hit
GACTCTGGGGACAAACGGAGTGCGACAGCTAGGCCAGGCGACAGCG530.10668062237072522No Hit
GCCACTGGGCAGCTGAGGAGCTCAAGCTGAAGTCAGATGAGGACCA530.10668062237072522No Hit
ATAGTAGGGAGACAGCGAAGTGTGACGCCAAGGACATGGCGGCCGC530.10668062237072522No Hit
AGCTTCGGGTGCCCTTCCCCTTCTGCAGGATGTCATTGCAACGGAC520.10466778043920211No Hit
TGTACGGGGGAGGGCTGTGTAGGAAAAGTTCTGGAATACGATGCTT520.10466778043920211No Hit
AACTGCGGGGGGGGGAATTCGCCCTAAGTTCCGGTCCGCAATTTCG520.10466778043920211No Hit
ACTTGCGGGAGATGCAGCCTGAGTTTTAACTCCTTGAGGGCTTCTG520.10466778043920211No Hit
TCCGGCGGGGGCCAACGCCCCGGCGGAGAAGCTGAGGACAAGATCT520.10466778043920211No Hit
CGTGACGGGGGGCTCTGGACCGGGCGGCCACTGCGCAGAGTGGAGG520.10466778043920211No Hit
TTACCCGGAGCCTGGCTGCTCTTTTCGACTCTCTGCGCCACATCCC520.10466778043920211No Hit
TGCTCTGGGGTGTGTTTAGTGATGACTGTTGTTCATTTCATCTTAG520.10466778043920211No Hit
TAATCAGGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCT520.10466778043920211No Hit
GAATCCGGGGCTCACTGCTGCGGCTGCGCCTCCTTGTTCTCAGCGT520.10466778043920211No Hit
TCCACGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCTG520.10466778043920211No Hit
AAACCAGGGGACTGACTGTCTCCTACCAAGGAACCAAACCTGTCTC510.102654938507679No Hit
TTGGGAAGGGGAGAGGAAAAGTGAGCTGTGCTGTGGCTCCCGCGGC510.102654938507679No Hit
TACGTTAGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG510.102654938507679No Hit
CAACGAGGGGATCCCGCTGCTCCGTTCCTCCGCTGTGCATGCGAGG510.102654938507679No Hit
TCACAGGGGTCTGTATTTGTTTCCTTCTGAGCCCTCTACTAATGTC510.102654938507679No Hit
TCGCCTGGGTGGGTTCCAGAGCTGTACGGTCGCACTGAACTCGGAT510.102654938507679No Hit
GCTACAGGGGACTGCAACGAGTGCGGGAAAAGCTTCGGCCGCAGCT510.102654938507679No Hit
TTCATAGGGCGATCTCATTGGGGGGGGAATTCGAGCTCTTTCGACG510.102654938507679No Hit
AAAAATGGGGGACAACTCCCCCGGGGCTTACAGGAGCCACCCAGAC510.102654938507679No Hit
GTAAGTGGGGGGACCTGTGCGATGTTGGCCTTCATTTCTGCAGCCC510.102654938507679No Hit
CCTATAGGGCGGTCCGAGCGAGCGCGTCCTTGCTTCAAAGAGATAG510.102654938507679No Hit
TTCAAGGGGGAAGCGGATGAATGCAGCAGTCAGCTTGATCATTGCT510.102654938507679No Hit
TGCCAAGGGCTATCACTCACACTAGCATTAAGTCTATGAGTTCCCC510.102654938507679No Hit
CTACCCGGGAGTGCCTCTGGTGAGGAGACAGCGCCACTGAGGCTTC510.102654938507679No Hit
TCTAACGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG510.102654938507679No Hit
ACACTCGGGATGTACAGTCTCTATGGTGGGAACGCAGTGGTAGAGT510.102654938507679No Hit
CGCACAGGGCCGGCTCTTTGTGGAGGACTCCATCCATGACCAGTTT500.10064209657615587No Hit
TACGCTGGGGACACCACACAGAAGACAAAAAAGGAGATGGATGAGA500.10064209657615587No Hit
CTACACAGGGGGCTGTGACAGAGGGGAACAAGATGGCGGCGCCAAA500.10064209657615587No Hit
TATTCAGGGGATCTTCATCTGGGGACAACAGTCAGACCTCGCCAGC500.10064209657615587No Hit
CCTAAAGGGGACACCATTGAGAATGTCAAGGCAAAGATCCAGGACA500.10064209657615587No Hit
CCTTACGGGGGCTAGAAGCTGCTGGCGGAGGACAAGGAGAACTAAC500.10064209657615587No Hit
TTCATAGGGAGAGTTGGCCTAGCTGTGCGCGCACCGCGGCGATGGG500.10064209657615587No Hit
GGCTCCGGGTGGTCCTTACAGCCTATGGAGGCCATATTGGTTTTCT500.10064209657615587No Hit
AGCATTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA500.10064209657615587No Hit
CTATATGGGGCTCTGGACTTGACTGTCCCTCCAGTGGACTTAGGGA500.10064209657615587No Hit
ATTCTAGGGGGGAGATTCGGAGCTGCAGGATCCGTCCGAGATGGCA500.10064209657615587No Hit
CTTCGCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA500.10064209657615587No Hit
CATTACGGGGACCTCACAGGGGGACTTGAGACCCACAAGACTGATC500.10064209657615587No Hit
AAGCCTGGGGCGTGGCTGTGTTCCGACTTTCCGGGTAAAGATGGCA500.10064209657615587No Hit
CTGTTTGGGATCTCGAGCCGGGTCTCCAAGATGGCCGCGTGGGGAA500.10064209657615587No Hit
ACACACGGGGAATCTTTTTTCCCCCAAATTGTGTTTCCCCCAGTGA500.10064209657615587No Hit
CGTCGGGGAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGGAGCTG500.10064209657615587No Hit
CGTAGAGGGGGCTGGGCAGAGCGAGCAGAGCCTCGGCGGGCCACTG500.10064209657615587No Hit
CTCACTGCCTACCACGACATCTCCCTAGACAAGTGCTACGTCATCG500.10064209657615587No Hit
AACTAAGGGGACCTTCAAGGGCCGAGGGATCACAGGGATTGAAGAC500.10064209657615587No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)