FastQCFastQC Report
Sat 31 Dec 2022
SRR5843355.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843355.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46492
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCAGACAGTAGAATGTAGGGAAAAGCTTTTGCCCGATGGATTTT930.20003441452292867No Hit
GCTCATGGGTACGGCCGATTGTCGCAGCCCGGGTCGATTATAACAA690.14841263012991482No Hit
AAACCAGGGGACTGACTGTCTCCTACCAAGGAACCAAACCTGTCTC670.14411081476383034No Hit
ATAGCTGGGCCAGGAGCCATGGCGTCTTATTTTGATGAGCACGACT660.1419599070807881No Hit
ACAATGGGGAAAAAAAATGAACCAACATTTTTTGGCTCCTTGGGAT650.13980899939774585No Hit
CTTTCAGACGCTACTTGGGGGGCAGGGAGAAGATGTTGGATTGCTC650.13980899939774585No Hit
CCGCTTGGGAGTAGTTGCTGCGGCTGCCACTGCAACCATGGTCTCC650.13980899939774585No Hit
CAACTGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAGT650.13980899939774585No Hit
GACGCTGGGAGTCTGAGGCAGGTGCCCGACATGGCGAGTGCTGTGC640.1376580917147036No Hit
TCAGAAGGGCTGGCCTGACCTCTTTTCCTGACCTTTATGCCAGCTT640.1376580917147036No Hit
GCGTCCGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT630.13550718403166137No Hit
TGTACGGGGGAGGGCTGTGTAGGAAAAGTTCTGGAATACGATGCTT630.13550718403166137No Hit
CTGACTGGGGGACCCTTTTCCGGTCCGGGCTGCCCGACCGCTCTTG630.13550718403166137No Hit
CTAACTTTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATA630.13550718403166137No Hit
GCATCTGGGAGGAGAGAGAGAGTAAGGAGCCAGCCATGAATCCTTT620.1333562763486191No Hit
CAAATGGGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCA620.1333562763486191No Hit
GCAAAGGGAGGTCTTGGAGTGTAGCCGTTAAGCCATCTTGTAACCC610.1312053686655769No Hit
CAGCTGGGGAGACTGGGAGACTCCCCCAAAAGGTAAAAGCTACCAA610.1312053686655769No Hit
ATCAGTGGGGAGATGGATGTCCCTCTGCACTGCCGGACAGAATTTT610.1312053686655769No Hit
CGCACAGGGCCGGCTCTTTGTGGAGGACTCCATCCATGACCAGTTT600.12905446098253462No Hit
TTTTGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC600.12905446098253462No Hit
TGTGCTGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG590.12690355329949238No Hit
GACATGGGGGCTGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGA590.12690355329949238No Hit
GCACCTGTTTTGTAACCCTGGGAAGGTTACAGCAGCCCTTTTCTGA590.12690355329949238No Hit
ACAGTAGGGGTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATCC590.12690355329949238No Hit
TATTCAGGGGGGCATGCGCATGCAGCACAACCTGGAGCAGCAGATC590.12690355329949238No Hit
CCATGTCGGGGTTCAAACGCATTGGGGACTTGCAAGCTGCCATTGA590.12690355329949238No Hit
TCACAGGGGTCTGTATTTGTTTCCTTCTGAGCCCTCTACTAATGTC580.12475264561645015No Hit
CACCTAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT580.12475264561645015No Hit
CGTCCTAGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA580.12475264561645015No Hit
TCAGACGGGGCTGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGA570.1226017379334079No Hit
GCTGGCGGGGACTGGCCTATGTGTGCTGCGTCCGGCAGCTGGAGAT570.1226017379334079No Hit
TTATTAGGGTGCACAAGACTGGTGGAAAAACCTCCCATGCGACTCT570.1226017379334079No Hit
AAGCATGGGGGGAGCCCGAGCAGCGGCCGCCCTTCGCCCAGCTTCA570.1226017379334079No Hit
ATCACAGGGGGATATCCAAGATGGCGCTGGCTGCTGCGCGTCGCCT570.1226017379334079No Hit
CGACCTGGGGTGGATGTTAGTATTCATGGACTGAACATAGAGCCAT570.1226017379334079No Hit
CTTTGTGGGGGCTCAGAGAAGTTAACTCTTTCAAGGTCACACAGTA560.12045083025036567No Hit
TTGCGCGGGGGGGTGCAGTCGTCACGAGCGTCTGGCCAGCAGCTCG560.12045083025036567No Hit
TTTGCTGGGGTTACTTGCTCTTGTGGATTTTGTGCATGCCCTTTGA560.12045083025036567No Hit
TATTGAGGGGGGAATTCGAGCTCTTTCGACGTTTTGAAGGAGGGTT560.12045083025036567No Hit
GGATATGGGGAGGGGAGCGGGGTTGCGGGCGCTTGACATGGCGGCA560.12045083025036567No Hit
CGAACTGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG560.12045083025036567No Hit
ATCACTGGGGGAGAGCGCGGATGCGGGCGAGGAAGATCTGGAGCAG550.11829992256732341No Hit
GATACTGGGGAGCTGTACGGTCGCACTGAACTCGGATAGGTCTCAG550.11829992256732341No Hit
ATCCTGGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCTT550.11829992256732341No Hit
GCACTTGGGACAAGTGGCCTGATCTGGCTCCACCCTCGGTCCGGGA550.11829992256732341No Hit
GCCACTGGGCAGCTGAGGAGCTCAAGCTGAAGTCAGATGAGGACCA550.11829992256732341No Hit
ACATCTGGGAGGCTGGAGGGGACCAAAAAGGGACACCAACTGCAGC550.11829992256732341No Hit
CGTAGAGGGGGCTGGGCAGAGCGAGCAGAGCCTCGGCGGGCCACTG550.11829992256732341No Hit
TGCATCGGGCGATCTTTACCCGGGGCTCCTTGGATTCTGAGCCCGG550.11829992256732341No Hit
TGCCATGGGTCATCATGATGAAACTTTGGGTCCCTTCTAGGAGTCT540.11614901488428116No Hit
CACTCCGGGGCAGGTCCAGCATGCCAGCAAACAGATCAGTGCAGAG540.11614901488428116No Hit
TGTTCTGGGGGTGCTCCCCAGCAGTTCCCCTACCCACCAAACTATG540.11614901488428116No Hit
GATGCAGGGGGTTGGCTGGCTGGGCAGACAACATGGCGGCGTCCGT540.11614901488428116No Hit
TTGCAGGGAAATCAGGGCAAGATCAATGCCTGGACGGCTCAGAGCA540.11614901488428116No Hit
ATAATTGGGGAAGAGCGTGACTAGGGCGTTAACCTCGAGGCGCTGG540.11614901488428116No Hit
TCTCTTGGGGAGATTTAGCGAGACCGAGGACGCAGGCGGAGCGGGC540.11614901488428116No Hit
GCAATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC540.11614901488428116No Hit
CATGGCGGGATCGCGCACGGCTTCTTCAGCGTCTATGGCATGTGCG540.11614901488428116No Hit
CTTTCTGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG540.11614901488428116No Hit
TCCGTGGGGGGGCGCTACACATACAGTAAGCAGCCCCAGGTATGCA540.11614901488428116No Hit
AATCTTGGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCT530.11399810720123893No Hit
AACATGGGGATCATTGCTGGAGTGGCATTTGGAATTGCGTTCTCCC530.11399810720123893No Hit
ATACAGGGGGGACTAGAGCCGGCAAGATGGCATCCAGTGACGGGAA530.11399810720123893No Hit
AGACTTGGGACCCCAGTCACTAGAAAGACTGTCATCTAACCTCTGC530.11399810720123893No Hit
GACACTGGGGCAGCTGGGGATGTACATGATCACCGTGATCGTGGGC530.11399810720123893No Hit
CTTCCAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA520.11184719951819667No Hit
ATCCGTGGGGAGTGAGTGTGTACCGTGTTAACGGCTGTTGCTCTCC520.11184719951819667No Hit
TCGCTCCGGGCGCATTATAACCTGTGAATTAAGCCGTCTGGCTTAT520.11184719951819667No Hit
CACATAGGGGACAATCTTTGACAATTTCCTCATCACCAATGATGAG520.11184719951819667No Hit
ATCACGGGGGGGAATTCAGATGTATATATGATGTCCTTGGACGGGG520.11184719951819667No Hit
TACGCTGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG520.11184719951819667No Hit
ATGCGCGGGGGGAACCAGCGAGAGCGCCGCTGCAGCCCAGCATGGC520.11184719951819667No Hit
CTTAAGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG520.11184719951819667No Hit
ACTCAAGGGGGCTCAATCCTCACATTCTAGCCATAGACAAACACCA520.11184719951819667No Hit
TCGGCTGGGATCCCGAGGGCGGGGCTCTGGGAATTGGGTATCTGGA520.11184719951819667No Hit
GAGCAAGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAAC520.11184719951819667No Hit
AACTAAGGGGACCTTCAAGGGCCGAGGGATCACAGGGATTGAAGAC520.11184719951819667No Hit
CTATAGGGGGGTGGGGAATGGCTGCCGTGGTTGGAAGAGCGCGTTG510.10969629183515443No Hit
ACTTATGGGAATTGAAAAATGAAGCATCAGGATAGGCAAATGTGTA510.10969629183515443No Hit
TCGCCCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA510.10969629183515443No Hit
TACGCTGGGGACACCACACAGAAGACAAAAAAGGAGATGGATGAGA510.10969629183515443No Hit
AACCAAGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG510.10969629183515443No Hit
TGTATTGGGCTGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAA510.10969629183515443No Hit
ATCCTTGGGGCCTCTCCTCTGCAGCGACCAGCTCACCCGCCTCGGA510.10969629183515443No Hit
TTCATAGGGCGATCTCATTGGGGGGGGAATTCGAGCTCTTTCGACG510.10969629183515443No Hit
TCAACGAGGGGTGACGCACACATGTCCCAGCTGCAAAGCCTACATC510.10969629183515443No Hit
ACTTGCGGGAGATGCAGCCTGAGTTTTAACTCCTTGAGGGCTTCTG510.10969629183515443No Hit
CTAATGGGGGAAGAAGACCGAGAGTTCCTCGGGGACTCGCTCAGCT510.10969629183515443No Hit
CGAACTGGGGTCAGTGTAGATGGTAAAACTCTCACAGAAAAAGGAA510.10969629183515443No Hit
AATTTGGGGGGGTGGGAGCCGCTGCGGGCGCGGCACTGCAGCCCTG510.10969629183515443No Hit
CAACTTGGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAGC510.10969629183515443No Hit
AAGCCTGGGGCGTGGCTGTGTTCCGACTTTCCGGGTAAAGATGGCA510.10969629183515443No Hit
GCTGCCGGGGCAGAGGCGCCACCCGCGAGAGGGGAGCCACTGGAGG510.10969629183515443No Hit
ACACAAGGGCGGTCCGAGCGAGCGCGTCCTTGCTTCAAAGAGATAG510.10969629183515443No Hit
TCTACTGGGAGGCTTACAAAAAGGAGCTGGAGGAACAGCTGGGTCC510.10969629183515443No Hit
TCCACGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCTG510.10969629183515443No Hit
CGTATGGGGAAGTAAGATGTGTCGCCCCATCCACTTAGCCTTCCTG510.10969629183515443No Hit
GACTGCGGGAGAGCAGCAGCCTGCTGACTTTGCAGTGGCTCCCCTG500.10754538415211219No Hit
GCACTAGGGTCAAATCAACAGCTGGAGACACCCACTTAGGTGGAGA500.10754538415211219No Hit
TGTATAGGGGACGGCGGCTGAGCCGCGGCAGGAGAGTACTGAGAAG500.10754538415211219No Hit
TAACATGGGAGGTGATCCGAGGGGCTTCGGAGGGTGTTTGAGCAGT500.10754538415211219No Hit
TAACCAGGGACAGCAGACTGGTTTTGGAGGTGGCCCAGCATTTGGG500.10754538415211219No Hit
AATGCGGGGGCCGATTGTCGCAGCCCGGGTCGATTATAACAACGGT500.10754538415211219No Hit
ACATGAGGGAAGTTTGCCAGTTTTCTGTCTTATACTGAGGTTCGCC500.10754538415211219No Hit
CTGCCGGGACACGACGCTTTTCCGATCTAGGAACGGGGGGAATTCA500.10754538415211219No Hit
TGCCACGGGCCCATCGAGAAATCTTCACCTATGCCCATGACAAGTT500.10754538415211219No Hit
CATCTGGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG500.10754538415211219No Hit
AATGCCGGGGTCATCCTGAACGAGCCTTCTGCGGATGCCCCAGCTG500.10754538415211219No Hit
GACACCCTCTTCTGGACTTCAGGAGCCCTGCATGCATGGAGTCCTC500.10754538415211219No Hit
ACTTGGGGGGCTCTTTCTTTTTCTCCACAGGGTCGTGGTGGCAGCC500.10754538415211219No Hit
ATGCCTGGGATGCTGGAATTGAAACAATACTTTAATACCGTTTAAG500.10754538415211219No Hit
CGCCAGAGAGGGGGGTTCAAAGACCCCCGGAGGGGGCCTACTCTGT490.10539447646906995No Hit
TTATCTGGGGGTACCACGTGGGCCAGGCGCCCCGCAGCCTGATCCC490.10539447646906995No Hit
TCAAAAGGGGAGTGCTCCTGAGCTGCCAAGGCTGCGGAAAGTGAGA490.10539447646906995No Hit
ATCCGTGGGTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGA490.10539447646906995No Hit
TATAATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC490.10539447646906995No Hit
ATGAAAGGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGC490.10539447646906995No Hit
TGGTGAGGGGAACTCCATTGCGTGCGTGCACGGCTTTATCAGTCTG490.10539447646906995No Hit
ACTTCAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT490.10539447646906995No Hit
GCCCATGGGGTCTAACCAGTTGTATGCGTGCTATGCCATCGGTAAG480.1032435687860277No Hit
TACGCAGGGGGAGTGAGGTTTAGGGAGCTGGGGCTCGCGCAGCGGG480.1032435687860277No Hit
ACGTGCAACTGACACTCCTACCCAGTCAAAGCTCTGCCTTTCAGCC480.1032435687860277No Hit
CCTAAAGGGGACACCATTGAGAATGTCAAGGCAAAGATCCAGGACA480.1032435687860277No Hit
AATGCAGGGGGGGCTGGTCCAGCAACCCGCAGGATGTCGGAGGTGC480.1032435687860277No Hit
TCGACTGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG480.1032435687860277No Hit
AGCATCGGGAAGATGGCATTGACCACAGTAACATTGGCAACAAGAT480.1032435687860277No Hit
ATCGTGGGGGTAGAAAGCGAAATCAGAGGAGATGTAACCATAGGCC480.1032435687860277No Hit
CCACTATTTGTCTGATCCGTACTTATTACAGCCGTACTGCTCCTAT480.1032435687860277No Hit
CAGCAAGGGGACGCTCTTCCGATCTGCTTCTGGGGGTTGACACTTC480.1032435687860277No Hit
CACGGCGGGACATCGACATCCGGGAGTCTGATTGCCTGTGGCTGTT480.1032435687860277No Hit
TCTCCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC480.1032435687860277No Hit
TGAAATGGGCTGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAA480.1032435687860277No Hit
TTTCAAGGGTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCC480.1032435687860277No Hit
TCTAACGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG480.1032435687860277No Hit
TTGCTCGGGGGCACGCGACCCTGGCGGTGGCTGCAGCGACAGCGCT480.1032435687860277No Hit
AACAGTGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG480.1032435687860277No Hit
GCAAAAGGGTGGACTTTGAGCTTGAGTCTTTCTCTGAAAGGAAGGA480.1032435687860277No Hit
CCACACGGGGCAGTCGGATCCCGGCAGCAGCTGCGGCGGCTCAGGT470.10109266110298547No Hit
TGCCCTGACCGGCTGGAGACTGAGATGCAGGAGCTTGCCATTCAGT470.10109266110298547No Hit
GCACAGGGGGGATTACTGGGGCCAAAATCATTCCACACGATCCAGT470.10109266110298547No Hit
GTAATTGGGGCCCCCAGCCTCTTCTCGATGGACTTCCTGGATGGAC470.10109266110298547No Hit
GCTACAGGGGACTGCAACGAGTGCGGGAAAAGCTTCGGCCGCAGCT470.10109266110298547No Hit
CCTTACGGGGGCTAGAAGCTGCTGGCGGAGGACAAGGAGAACTAAC470.10109266110298547No Hit
GTAATAGGGCCCCACACCTTGTATTTCCTGGAAAAGGCCAATTTAC470.10109266110298547No Hit
GAACACGGGGGGCGCAGTTTCCCCGAAGTAAGTTTGCCAGTTTTCT470.10109266110298547No Hit
AAAAATGGGGGACAACTCCCCCGGGGCTTACAGGAGCCACCCAGAC470.10109266110298547No Hit
GTAAGTGGGGGGACCTGTGCGATGTTGGCCTTCATTTCTGCAGCCC470.10109266110298547No Hit
AAACTCGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC470.10109266110298547No Hit
TGGGCAGGGGACTTTGAAGTGGCTCAGTTTCCCCTGCGGATGAGAG470.10109266110298547No Hit
TTACAAGGGGAGAGCCGGAGTCTGCGATCCGCAGAGCAGCAGCCTG470.10109266110298547No Hit
ATAGTAGGGAGACAGCGAAGTGTGACGCCAAGGACATGGCGGCCGC470.10109266110298547No Hit
TTGTTAGGGTCCATCCTAGCTCCAGAGAACAAGGATGGGGTGGGTG470.10109266110298547No Hit
CAGGCTGGGTGGAGAAGGAGACGTACTACTGAGCTCAGCGGCAAAG470.10109266110298547No Hit
TGTTAGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG470.10109266110298547No Hit
CTCACTGCCTACCACGACATCTCCCTAGACAAGTGCTACGTCATCG470.10109266110298547No Hit
GCAGTTGGGGGGAATTCAGATGTATATATGATGTCCTTGGACGGGG470.10109266110298547No Hit
CTGATAACGGGAGGATCGCGACAGGGAAGTGGTGATGTCGCGGTGG470.10109266110298547No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)