FastQCFastQC Report
Sat 31 Dec 2022
SRR5843338.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843338.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16046
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATACAGGGAAGATTTGGACCAGCAGAGCCTGCCAAGTGAGCCAGA230.14333790352735884No Hit
AGGTTTGGGGGGCTAGGGCAAAGCTTAGTGCTCAGAAAGAGGCACT230.14333790352735884No Hit
TGCACGGGAGAGAAAGATACATTGTCTCCCCTACCAGCTCCGCTAA210.13087373800324067No Hit
TGCCAAGGGGGAGGCTATGGAGGCTATGATGATTATAATGGCTATA200.12464165524118162No Hit
AACTCAGGGGGGGGGCGGACCGGCACATCGACATCCGGGAGTCTGA190.11840957247912254No Hit
ACACAAGGGGTCCCCAACCAATCTATAACAAGACCCAAACTAATTC180.11217748971706346No Hit
TGTCTAGGGGGATGCCCACGACGCTGGTGTTGCGGACTCCGCGACC180.11217748971706346No Hit
GTTAAGGGGTACTGTTAAAATACCAACATACGTCAATCTGATGTAT180.11217748971706346No Hit
TGGCTTGGGAGCTGGACTTATGTCAGGTGGTTTGATCCCAAGTCTT180.11217748971706346No Hit
TATCCTGGGGAAATAGACAACGAGCACTCTTGGACTGAACCTGTGT170.10594540695500437No Hit
AGAAACGGGGTTACCAGGTGATGGAGGTGGGCTAGGGCAAAGCTTA170.10594540695500437No Hit
GAACTGGGGGATGCTTACAAAAAAAATGATAAGAAAAACACAGAAG170.10594540695500437No Hit
CATGGAGGGATTGTCAGAAGCATCGCCCCCAAAGCAGACCTCACAC170.10594540695500437No Hit
CTCGATGGGATGTATCCCACAGTAAGTTCACATGCAAGCTCCACAC170.10594540695500437No Hit
CTCAGAGGGATGGGATAATGGAAAGAGTTTAGGAGTTGAAATACTT170.10594540695500437No Hit
TGTGTCGGGACCCACATCTGGGGCTAGGTGAACAGCAGGGTACAAG170.10594540695500437No Hit
TAACGTGGGATACTTATGGGGTGATAATATCTCCATAGTTAGTTGA170.10594540695500437No Hit
CAATGCGGGACCTACTCTCTTAAGATAATGACTCAAATTAAGCTTT170.10594540695500437No Hit
TTTAAAGGCACTTGAGGGCACTTTGTTTATGTTGATAGTTCTTGGA170.10594540695500437No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)