FastQCFastQC Report
Sat 31 Dec 2022
SRR5843326.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843326.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35243
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTACCCGGGATGCGCGGGGTGACGGGAAAAATCTACTGAAGTTGAG470.13335981613370032No Hit
CCTGCAGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT460.1305223732372386No Hit
AACAATGGGTTGCAAGCTCCTTTCTGTAACTCAGCGATCATGAGAG460.1305223732372386No Hit
GCAAAGGGGAGTCGAGCCCTTGAGCAAAAAGCCTACCCATCTGTAA420.11917260165139176No Hit
ATATGGGCTGGAGGGCGGCGAACGGGCAGCAGGACCGCGGTCACTG420.11917260165139176No Hit
TACTTAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC410.11633515875493006No Hit
TAGCTTGGGGCTACAAACTGCTCAGCACTGAAGGAGCCTGCAGCGC410.11633515875493006No Hit
AAGCGTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC410.11633515875493006No Hit
TACACAGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA400.11349771585846835No Hit
GTGCACGGGGACTCTTCTTCAGTCTGCTTCTTTTTTCAGGCAGGAC400.11349771585846835No Hit
TGCTATGGGAGGCAGGACAGCGAGATTCCAGAAGCTCCGCGCCCAG400.11349771585846835No Hit
TCTAAAGGGGACAGGGGGCTGGCACAGCCCGCCCTAGCCCTGAGGA390.11066027296200663No Hit
AACGCCCGGGGCAGAGCCATTTATTAAATGGTTGAAGGAAGCAGAG380.10782283006554494No Hit
GCAATGGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC380.10782283006554494No Hit
GCAACTGGGGACCCGGGGCCCGGTTCCAGCCCCTCTGGCCCGGCGC380.10782283006554494No Hit
GCACCTGGGGGCAGACTGTTGTAGTTTGGAAGTCTCACTTTTAGAT380.10782283006554494No Hit
AGCCCATGCAGGAGCATCAGTAGACCTAACAATTTTCTCCCTTCAT370.10498538716908323No Hit
AACCACGGGACCGCCCTGGCCGCGAGACCGCGCCCCAACCTGGCCG370.10498538716908323No Hit
GGTGCTGGGCGGTGATAAGAGGGAAGCCAAGGCAGACTTACATGCC370.10498538716908323No Hit
GCATCCGGGACCAATAATAATTGGAGGCTTTGGAAACTGACTTGTC370.10498538716908323No Hit
CGCAATGGGGGGTGCGATACGAGGAGCTTTAGACTTGCAAGTGTGT360.10214794427262151No Hit
CAGGCAGGGAGCTCCAGCTTGGAGGATGGCCCTTCCCTACTTCCAG360.10214794427262151No Hit
ACTGTCGGGAGCCTGGTTCCGAGCGTAACAGAGTGGGCCTTGGACC360.10214794427262151No Hit
TCTACCGGGGTCTGGACTTGACTGTCCCTCCAGTGGACTTAGGGAC360.10214794427262151No Hit
TAGTTTGGGCCAGTGGAACTTGTGGTTACCAAGTCTGAGGGAGGTT360.10214794427262151No Hit
AGTATGGGGGAGGAGTGCACGGGAGAGGCCAGGAGCGGCTCCGTTT360.10214794427262151No Hit
CAAGCTGGGAAGACCTTCAGCGTTGCCTTGGTGGAGCGGGACGGGC360.10214794427262151No Hit
TGTCACGGGGAGACAATGCCCCGGAGCCGCCAGACCATCGCGCCCC360.10214794427262151No Hit
TAACCAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC360.10214794427262151No Hit
ACTAGTGGGGGCTGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGG360.10214794427262151No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)