FastQCFastQC Report
Sat 31 Dec 2022
SRR5843325.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843325.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33970
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACACAGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA460.13541360023550192No Hit
ACACCTTGCCTATTTTAAGTGAAACTTACCACCAATGATGTGGGGA440.12952605239917575No Hit
GCAATGGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC410.1206947306446865No Hit
TTTCATGGGGGTGCGGACGGGTCAGGAGCGTAGAGGCGGCGGCAAA410.1206947306446865No Hit
CTTAAGGGGAGGCGCGGCGGGGGAGCGAGGTCGCGCAGGCGCAGAC400.11775095672652341No Hit
CAGCCAAGGGGACCGGGCAGGCAGCTGGCACCATGAAGATCTGGAC390.11480718280836033No Hit
GTACGCGGGGACTTCCTTCTTGAGCCCAGAGCCGCCGCCGCCGCCC390.11480718280836033No Hit
GCAACAAGATGCATCAGCATGTAGTCAAATGTGGTGTCTGCAACGA390.11480718280836033No Hit
CTAAACGGGGAATTTTCACTTTTGGCACATTTGAGGCTTAAATATA390.11480718280836033No Hit
AGCCTGGGAAATGGAATACCCCTACACAACCAAGATGCTGAGTTCC380.11186340889019722No Hit
GGCTTAGGGCAACCCCTATGGACAGCCACCACCCTTCCAGGACCCT370.10891963497203414No Hit
AAGCGTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC370.10891963497203414No Hit
TCTCATGGGGAGCCCAGGCCTGCCCGGGATAGTGTAACATGGGTTC370.10891963497203414No Hit
ATCATCGGGACAGTAGCGGGTTCGGAGGCAGCAGTTGGGCTCGCGG370.10891963497203414No Hit
AGCCCATGCAGGAGCATCAGTAGACCTAACAATTTTCTCCCTTCAT360.10597586105387105No Hit
AACCACGGGACCGCCCTGGCCGCGAGACCGCGCCCCAACCTGGCCG360.10597586105387105No Hit
AGTAGTGGGGATCTTGTACTGGGGTGCAGCAGCGGCGGCGGCGCTA360.10597586105387105No Hit
TGGAGGGGGCAAGTGATTAAAAACAACCTACCCTCATGGAATTCAT360.10597586105387105No Hit
CCAATGAGGGGGGACCATGGAGGGTCAGGCTGTGAAGCCGGAGCCT360.10597586105387105No Hit
ACTCTTGGGGGGGAGTGTATTGCAAGAAGGCTGTGAAAAAATCAGT360.10597586105387105No Hit
CATGCAGGGGCAGTCTTTCGGCGGTCGGACATGGGCACACAGCAGA360.10597586105387105No Hit
AACGCCCGGGGCAGAGCCATTTATTAAATGGTTGAAGGAAGCAGAG350.10303208713570797No Hit
TCATACGGGGGGTCCTGTGCTGCCCATGCTTACAAACAAGTGGATC350.10303208713570797No Hit
CCTGCAGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT350.10303208713570797No Hit
TAACTAAGGGGAGAGTGGGAGGCGCTTAGTGCTGCTCCGGTACAGG350.10303208713570797No Hit
CCAATTGGGGCTGGGGCGGGGGGTGCGACTCCGGTTGCCGGTGCGC350.10303208713570797No Hit
GGACGCGGGAGTGTCAGTGATAGCTACTGAATCGGGGACTGTGAGA350.10303208713570797No Hit
TACCAGGGGTCTTAGGTCCTGTAATCACAATATCCAGCACCAACCT350.10303208713570797No Hit
TAACCAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC350.10303208713570797No Hit
TGCGCTGGGCGATCTCAGCCAGGGCACAGGCATCGTTCAGGTGTAC350.10303208713570797No Hit
TACAGAAGGGGAGCGAAGTGTGACGCCAAGGACATGGCGGCCGCGA340.1000883132175449No Hit
ACAAGTGGGAGAAGAGGAGGCAGCTCTTCCAGGTCAAGCTTGCAAG340.1000883132175449No Hit
CATTATGGGGCGTTGACCGTCCGGGCCCGCGCCTGTCCGCGCTAAT340.1000883132175449No Hit
TGTCACGGGGAGACAATGCCCCGGAGCCGCCAGACCATCGCGCCCC340.1000883132175449No Hit
TATCGCGGGGGCGCGCACGGGTGGACGGAGACTATTAACACGCGGC340.1000883132175449No Hit
AGTAGCGGGGTGTGGGGCCGTGTGCAGACCCGCGTGTGGCGCAGGC340.1000883132175449No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)