FastQCFastQC Report
Sat 31 Dec 2022
SRR5843324.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843324.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39396
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCTAAGGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCT470.11930145192405321No Hit
GTCAAGCGGGGGGAAGTGAAGCGTTTTGAGCTGCCACGTCCGAGGC460.11676312315971164No Hit
CAAGACGGGGAGAGAGGAAGCGGAAGAGAGCCGCGAAAAGCAACTA440.11168646563102853No Hit
CCCACCACGACGACTCCCTAAATACAGACCTCATGTTTCCCAAAAG430.10914813686668697No Hit
TCAACCGGGGAGGGTTGTTTTCAAAAAAACAGCAGAAGAATCAAGC430.10914813686668697No Hit
AGTTTTGGGGAGAGATGCTGGACTCGTTGTTGGCCATCGGTGGTTT420.10660980810234541No Hit
TCTTGCGGGGACTGTCGAGTCGCGTCCACCCGCGAGCACAGCTTCT420.10660980810234541No Hit
CATTGAGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT410.10407147933800387No Hit
GTTACAGGGCAGGGCAAGCGGGGCTTACAGGGATGCTCCAGAGATG400.10153315057366231No Hit
GTCTGCGGGAGAGTCGCAGACGCGGAGACTGACTGACCTGCGGAGC400.10153315057366231No Hit
CTATTAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC400.10153315057366231No Hit
AATTGTGGGGGAAGCTCACCTGTGCAGTAGGGGACGGAGGCAATGA400.10153315057366231No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)