FastQCFastQC Report
Sat 31 Dec 2022
SRR5843323.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843323.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37705
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCTAAGGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCT450.1193475666357247No Hit
ACACTAGGGTCAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTT420.11139106219334306No Hit
CATTTAGGGGGTTGCCCGGGATGCGGGCATGTTCCGCGGCCGTCTT410.10873889404588251No Hit
CTAGCTGGGGCCCGGGAGAATCCGCGTTGAAGAACAGAGCATTTAG410.10873889404588251No Hit
CAAGACGGGGAGAGAGGAAGCGGAAGAGAGCCGCGAAAAGCAACTA400.10608672589842195No Hit
CATCTAGGGGGATAACCTGATGTTGGAGAAGGCCTGCATGGCCGTG400.10608672589842195No Hit
TCTTGCGGGGACTGTCGAGTCGCGTCCACCCGCGAGCACAGCTTCT400.10608672589842195No Hit
AACTTTGGGAGGCGGAGACATGTCCTCGGGGGTGGCCGCGCGTCGC400.10608672589842195No Hit
GTCAAGCGGGGGGAAGTGAAGCGTTTTGAGCTGCCACGTCCGAGGC380.10078238960350087No Hit
CTAGCCGGGGAGGCGAAGGCAGGAGGCGGTGCGGGAGGCGAGAAGC380.10078238960350087No Hit
GGCACAGGGGGGACTGGAGAAGGGAGGCGGCGGGCAAAGCGCACGT380.10078238960350087No Hit
TTACGGGGACACTGCAGGACCGCTAGACGGACGACAACTTCTGCTC380.10078238960350087No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)