FastQCFastQC Report
Sat 31 Dec 2022
SRR5843321.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843321.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24191
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTACCGGGATGGCATGTGCCATCAGCATTCTGGGAAAGTCTCTGG400.1653507502790294No Hit
ATCAATGGGACCAAAAAGAAATGGGAAAACGGGCACTGCTTAAAAG380.15708321276507792No Hit
TTACAGGGGACTGGAAGCGAGGCTGTGCTGCTGGGATGCCAGCTGT370.1529494440081022No Hit
ACTCATGGGGCAGAACGGAAAGGTTCTCAGGTAGAGAGCAGAAATG350.14468190649415072No Hit
TCTGCAGGTGCTATCTGAGAGGTACTCGCAGAAGTGCCTGGAGATC350.14468190649415072No Hit
TATGCCGGGCTTCCTAGATTGCAGAGCTTTCATATCCACGATGCGT340.14054813773717498No Hit
GTCGACGGGGGGACCAATATGAACTGCTCTGCCTTGACAATACCCG340.14054813773717498No Hit
CTAAAAGGGGAGGGTTTTCGTCTCAGGTTTGCTCCGCCGCCACTTT330.13641436898019924No Hit
TCTTATGGGCTTGAGGGAGACCAGCTACACTGATCCTGCCCTTGTC330.13641436898019924No Hit
ACTCATGGGGGGTTCCCCAGCTCAGCCCCAGGACTCCGTGCCCTGC330.13641436898019924No Hit
CATGCAGGGATTCTCGCTAGTTCGATCGGTAGCGGGAGCGGAGAGC330.13641436898019924No Hit
TGACAGGGGATGTTCTGAAAGGGCAGCGTTGATAGCTGAAACTAGG320.13228060022322352No Hit
ATCACTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC320.13228060022322352No Hit
TAGATGGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC320.13228060022322352No Hit
CTCACTGGGATCTCCACAAGTCCTGGGTCAACGCTGTAGCCTTTGA310.12814683146624778No Hit
AAGCAGGGGGGATGTAGTTGAGTTGCAGCGGAAAGGAAATGTGTCA310.12814683146624778No Hit
AAGCTCGGGGTGTCATGCTTTTTACTGAAATGTAATCAGGGATCAG310.12814683146624778No Hit
TAATTTGGGACACAGATCCACAAGCTCCTGACAGGATGGCTTCCCT310.12814683146624778No Hit
CCATCAGGGGCAGAAGCGGGTCGGTCTGTACTCCCCGCTCCTCGCC310.12814683146624778No Hit
GAGCCGGGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCT310.12814683146624778No Hit
TGTGGCTGGGAGAGAGAAAAAGTAAAGGACAGAAGAAGGAGACTGG310.12814683146624778No Hit
TACACGGGGAAACGGAAGGGGCCGGGAGAGGCCGCGTTCAGTCGGA300.12401306270927205No Hit
CTTACTGGGAGTCCCGGAGCCGGTCCGCAGAGGGAAGGAGGCAAGA300.12401306270927205No Hit
AATCTAGGGCCCTGCAGAGGGGCTGCCAGGACCTATCTACACAGGA300.12401306270927205No Hit
GACACCGGGGGGTTCCAGAGGCCAACATCAAGCTCATTCTTTGGAG300.12401306270927205No Hit
CATTCTGGATGACCAGCTTGGGACTGAGCCTTTGGATCTACACAAT300.12401306270927205No Hit
TCAGTAGGGGAAAAATGAGGAGAGATGGGTGGCCTGCCATGGGCAT300.12401306270927205No Hit
TCATGCGGGCAGTCGGATCCCGGCAGCAGCTGCGGCGGCTCAGGTC300.12401306270927205No Hit
CTTACAGGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCT300.12401306270927205No Hit
GTAGGAGGGGGCCGAAAGGGAGCAGCGGGGAAGGAGGATGGCGGAT290.11987929395229631No Hit
GGCCTGGAGAGACCTGTTCAACAAGCTGGAAGCCCAGAGCAGTGTG290.11987929395229631No Hit
CTTTGCGGGGACGCCATTTTGTCGGTGTCTGTCGCAGCGGCTGGAG290.11987929395229631No Hit
CTTGACGGGGAGGCACTTGCTGCCCTTGCGTGCCCTGTCACCAAGG290.11987929395229631No Hit
GGCTAGGGGGGAGCGAGCCGGGCGGCGGGGCGGCCGCGCAGTGTCC290.11987929395229631No Hit
ACTCTTGGGCAGCTACATTTTCAGCTTTGTGAGAAACCTCATCATC290.11987929395229631No Hit
GAGCTCTTCCCCAGAAGCGAAATATGATGCATTCCTTGTAACCAAC290.11987929395229631No Hit
TAGTACGGGGGAGAGAGAGAACAACCCCTTTGACAACGACGAAGAG280.11574552519532057No Hit
TTTTCAGGGGAGGCGCGGGTAATGCACCATGCCGCTGGAACTGGAG280.11574552519532057No Hit
TCATTGGGGGATCTGTATTCGGGGAGTGACGAGAGGCTTTGTCCGG280.11574552519532057No Hit
ACAAAGGGGGACCACTAATTGAAGGAGTGAGAAGAGAACAGCTCGC280.11574552519532057No Hit
TGCTTAGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG280.11574552519532057No Hit
ACACGCAAGTCCATCGATCACTACCCCACATTGCAACCAAGCACAT270.11161175643834484No Hit
AAAGCTGGGGAGACCATCCAAGAAGACCCCACAGCAGCTTCCGGAG270.11161175643834484No Hit
CACTACGGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCT270.11161175643834484No Hit
TCAACAGGGGTCGCAGGGCCGGAGGCGCGGGGATAGAAGGAGCACC270.11161175643834484No Hit
CTCATTGGGACTGCCATCTGGGGACCTAGGGGCCCTGCAGGGTCTG270.11161175643834484No Hit
AGTGATGGGGACACCTCGAACACCACCTCCATCCCAAGGGAAGGGG270.11161175643834484No Hit
TGTTCAGGGTCAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTT270.11161175643834484No Hit
TCCGCAGGATTCCACATCTAAAGAAGACAGGACCTTGTGCCTGCCT270.11161175643834484No Hit
TAGGCTGGGGTTTTCTTCCCCCTAAAGAGCTTTGTTTTTCCTAACA270.11161175643834484No Hit
AGACTTGGGAAGAGGGGTGGCAGGATGAATGTGGGCACAGCACACA260.1074779876813691No Hit
CTATGCTGAGCATTCCCTGCTAGACCTGCCCTAGGCGTGGACTTAC260.1074779876813691No Hit
CCTGTGGGGATGCTCGAGTATATGAAGAGCTCTTAGCCATTCCTGT260.1074779876813691No Hit
AATAGCGGGGGAGGTTCGGTTGTGTGGAGCTGGAGCGGGCAGCAGG260.1074779876813691No Hit
CAATGAGGGGCCTTCCTAGATTGCAGAGCTTTCATATCCACGATGC260.1074779876813691No Hit
AGTCGTGGGGGGCTTTGACGGCAGCACAGGTCTATCGTCTGTGGAA260.1074779876813691No Hit
AAGGCTGGGCTCTAGAGAATCAGGGGTTCCCTTGCATTGCATGTTT260.1074779876813691No Hit
TGTACGGGGATCTCACAAGGGGGTGTGTTGGTGGTGGGGGTTTTTT260.1074779876813691No Hit
GTAGTGGGGCTTTTTTCGGCGGTCGGACATGGGCACACAGCAGAAA260.1074779876813691No Hit
GCCGTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCTG260.1074779876813691No Hit
CTGGCAGGGGACAGCGGGGCGGACTCTAGAGGTGGCTGCTCTGAGT260.1074779876813691No Hit
GCTACAGGGCGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAG260.1074779876813691No Hit
ATACATGGGGAGACCGCAGGGATGGCGGCAGGGCAGGGTGGGTGGC260.1074779876813691No Hit
TTCGTAGGGAGACGCGGCGGACGCGGAGAGACGCTCGGAGCCGACG260.1074779876813691No Hit
ACTATAGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA260.1074779876813691No Hit
GAAACTGGGCAGAAAGCATCACAAAAATATTTGAAATTGTACGGTC260.1074779876813691No Hit
CTAACCGGGGAGTATGGCATCGAGGAGAATGGAGACCAAACCTGTG250.10334421892439338No Hit
TAACAAGGGGACTCTCCTTGGGACACGGAGGTCTTCAGCACCCACA250.10334421892439338No Hit
AAAAGCGGGGCGATTCTGTGGGCGGAACACATCGTCTCTCCGCCAT250.10334421892439338No Hit
TACCAAGGGGACTGCAGGACCGCTAGACGGACGACAACTTCTGCTC250.10334421892439338No Hit
GTATACGGGGTGGTGAACCTTTTCTGGTCATTTGATGCCCACAAAC250.10334421892439338No Hit
TATCGCGGGAGAGCCCGGGAGTCAAAGCCGGTTGTCAACCCAGCCC250.10334421892439338No Hit
GTCCCGGGGAAGCGAAAGCACAAGAAAGACATCAGTGAGAACAAGA250.10334421892439338No Hit
GGGTTTGGGAGTCCGAGTGGAGCGAGCGAGTCGAGCGGTTGTCTGG250.10334421892439338No Hit
GTATGTGGGTTACTTCTGCCAGCTCTACACGGAGGACACCCACCAT250.10334421892439338No Hit
TTCAGTGGGGAGACTGGAAGCGAGGCTGTGCTGCTGGGATGCCAGC250.10334421892439338No Hit
TCGTCCGGGCGATCTCTGATAGGGGCAGCATCCAGCACCTTAAGAA250.10334421892439338No Hit
CGTCGAGGGCAGTCGGATCCCGGCAGCAGCTGCGGCGGCTCAGGTC250.10334421892439338No Hit
AGGCGCGGGAGTTCGATCGGTAGCGGGAGCGGAGAGCGGACCCCAG250.10334421892439338No Hit
TTGTCAGGGGGTTCAGTACCGCGCGAGTCTGTCAGGAGCAGGATGG250.10334421892439338No Hit
GGCTGGATTCTACTATTGGCTTGAAATGAATGTGAATTTGGGTGAA250.10334421892439338No Hit
GCGACAGGGGCTCCCAGGCTGCCCTTCCAGGCCTCAACATCATACA250.10334421892439338No Hit
CTTGTTGGGGAACAGTTCTCCAACAGCAGAGATCAAAAGTCAGGGG250.10334421892439338No Hit
AGTCACGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG250.10334421892439338No Hit
TAGCATGGGGAGTCGGACCGGGCTGGGCTCGCTAAAGGAGAGGCAC250.10334421892439338No Hit
CCGTGAGGGGGCTCTTGGCATTTGTGCCATGGCGGTCTCTCTCCTC250.10334421892439338No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)