FastQCFastQC Report
Sat 31 Dec 2022
SRR5843320.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843320.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30002
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACCAGGTGCACTTTTAGGAGATGACCAAATTTACAATGTTATCG500.1666555562962469No Hit
AAAACAGGGGGACGCAGTCCTGGAACTCAATGCCTCAAATGACAGG450.14999000066662221No Hit
CGCAAAGGGGGGGCAGTCATCTGGAGCCATCTTGGGTGGCTTCTCA420.1399906672888474No Hit
ATCGCTGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG420.1399906672888474No Hit
TGTTTTGGGGGAGCTCCTTCCCGTGAATGGGGAATTCAGCCTGGAT410.13665755616292247No Hit
GCTAACGGGGGAAGATCACGTGTCCAGAACGTCCGGCGCCCGCCCC410.13665755616292247No Hit
TACCTAGGGGGAGGAGGATAAGGATACAGTAGGAGGTGGAGACCTG400.13332444503699753No Hit
TGCAAAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC400.13332444503699753No Hit
TTTTTTGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA390.1299913339110726No Hit
ACTCTTGGGGAGCCGCAGCGTGTCTCAGTCGGTTGTCGAGTCCCTT390.1299913339110726No Hit
GCTAGGGGAGTGGCCGAGAGAACAAGGAGAATGGCGGCCGAGGCCT390.1299913339110726No Hit
AAGCGGGACAGCAGGCTCCTGCTAGAAATGGGGGATGCCTGAGAAG380.12665822278514766No Hit
ACTTCAGGGGAGGAAGGGACATGCAGCCGGAGGACCTCAGCTTGGC370.12332511165922273No Hit
ATCTGTGGGAGTACTCGCCGGGCTTCGCAGATGGCTTGCCCCGCTC370.12332511165922273No Hit
ACACCCGGGGAGAGGGAAAGGCGGCTATTGACGCGGCAGCTGGAGA370.12332511165922273No Hit
GAAATTGGGGAAGCCAAATCTTATCCTGAATGTGGACGGCTTCATC370.12332511165922273No Hit
TCGTCGCGGGGAGGCAGTGCCTCGTGTATTTAGGCCGTCCACCACA360.11999200053329777No Hit
ATTCTAGGGGAGCTCCAGGTATCTCTGTCATACCAGCCCGTCGCAC360.11999200053329777No Hit
TACAATGGGGGAAAGGATCTGCTGCTCCAGCTGGAGGACGAGACTC360.11999200053329777No Hit
GGCAGGGGATATGCTCCCCAACTCAACTGAGCGGGCAATCACTATT360.11999200053329777No Hit
TATGTTGGGGGACAAGGCCACCGGTTATCACTACCGCTGTATCACT360.11999200053329777No Hit
ATTCGCGGGCTTCCGATCTTGGATAGGGGCTCTATCTGCGGCGTGT360.11999200053329777No Hit
CACAACGGGAGCCCATGCAGGAGCATCAGTAGACCTAACAATTTTC360.11999200053329777No Hit
TCATTAGGGGAGGGAGATCAGGCCACCACGAGACAGAGATGGAGAC350.11665888940737283No Hit
CTCCGCGGGAGAGGAAAAGTGAGCTGTGCTGTGGCTCCCGCGGCTG350.11665888940737283No Hit
GGCAAAGGGAGATGACAGCAGGAGCATCAAGAGAAGCCTGTTTCTG350.11665888940737283No Hit
TTCTTCGGGATCCTAGCTGTAAGTGGAGCCAGACCTGCTAAGCAAG350.11665888940737283No Hit
TTTAGTGGGAGAGATGCTGGACTCGTTGTTGGCCATCGGTGGTTTG350.11665888940737283No Hit
ACAACAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT350.11665888940737283No Hit
TCCTTTGGGGGGGAGAATCCGCGTTGAAGAACAGAGCATTTAGCTC350.11665888940737283No Hit
CTCAATGGGGGACCTCAGCTTGGCCTGACCCTGCTGTTAGGGACTC350.11665888940737283No Hit
GCTTTTGGGGAGTTCTCAGCAGAGCCGCCGGCGCCATTGCCTTCTC350.11665888940737283No Hit
TTTACCGGGCGATCTTGGCATGGGGGAAAGGCGCATTGATGCGGCA350.11665888940737283No Hit
AGACTTGGGGGCAGAGAGGAGAGGGAGCCGGAGATGCCAGACGCTT340.1133257782814479No Hit
TAGAAGCGGGGGGAATTCAGATGTATATATGATGTCCTTGGACGGG340.1133257782814479No Hit
AAATCAGGGGGCGCGGCTGGAGTTCTGCGGACACCAGGACTTCAAG340.1133257782814479No Hit
TGTTACGGGGAACAATGGTTAATTATGATATTGCTAACACAATCAA340.1133257782814479No Hit
ATTTATGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA340.1133257782814479No Hit
TGTGCTGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA340.1133257782814479No Hit
CGCGCAGGGGGAATCCACGCGGAGGAAAGAAGAGACGCAGGCAGGC340.1133257782814479No Hit
CTCGCAATTGGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTC340.1133257782814479No Hit
CATTCTGGGGTGCATGAGCTGACCCCACACCCTGAGCAGCTGGGCC340.1133257782814479No Hit
TGAAGTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC330.10999266715552296No Hit
GACTTGGGAAACCACAGGCAAAGAACAAGAAGCCTCCGCCTGCCAA330.10999266715552296No Hit
ATTACCGGGAGACTGGAAGCGAGGCTGTGCTGCTGGGATGCCAGCT330.10999266715552296No Hit
CTCGATGGGCTCCCTCTAGGCCTCCCTCCTCCGTCCGCGCCCGCCG330.10999266715552296No Hit
GACTTGTCCCACTAATAATCGGAGCCCCAGATATAGCATTCCCACG330.10999266715552296No Hit
TACTAAGGGCTCATTGAACGCGGAGGCAGCTGCCGGGCATTCGTGT330.10999266715552296No Hit
CAACGTGGGGTACGGTGGTGAGTTGGTGTGCTGGGCAGAGTTGGGG330.10999266715552296No Hit
ACCCAGGGAAGGAGAGAATAGGGCACAGGTATATTGAAGTGTTTAA330.10999266715552296No Hit
GCGCATGGGGATCATAATGCCCAGCTGGTGGTTATGATTCCAGATG330.10999266715552296No Hit
TACGAAGGGAGAAGGCTGGCGAGCAGCTAGCATGGCAGATGAGGAG330.10999266715552296No Hit
ATAACAGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA330.10999266715552296No Hit
TCTATAGGGGCTGTAGCCATGGCGTCCGAGCGGCTGCCAAGCAGGC320.10665955602959802No Hit
AACCTTGGGATATATCTTTTTCCTTTATTCAAAACAAAACAATTTT320.10665955602959802No Hit
GGCGGTGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG320.10665955602959802No Hit
GGTTATGGGCATCAGGATTAAAATCAAGCTTGCTCGGGCAAGTATC320.10665955602959802No Hit
TTACGTGGGACCTATAGCCCTCTGGAAATGCCTTTGAGATGGTTTT320.10665955602959802No Hit
GGTCATGGGCAATAGTAGAAGCAGGAGCAGGAACAGGATGAACAGT320.10665955602959802No Hit
TCTCCCGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC320.10665955602959802No Hit
TCTTTGGGGGGCTCTCTGCTCCTCCCTGTTCCAGAGACAGCCGCAT320.10665955602959802No Hit
GAGTTTGGGGGCTTCTGAAGGAGGCAGGCTCAGCGCGCTTGCGCGG320.10665955602959802No Hit
AGCAGTGGGGACCGCAGAGACGGCGGAGGGTCCCAGCACGCTACGT320.10665955602959802No Hit
TAGCCAGGGACCACTAATTGAAGGAGTGAGAAGAGAACAGCTCGCT320.10665955602959802No Hit
CGAAATGGGGAGAGGAAGATGGCGCCTCGAAGAGAGAGGGTCTCTA320.10665955602959802No Hit
TCACACGGGTATCTACTATTCGGAGCCTGAGCGGGAATAGTGGGTA320.10665955602959802No Hit
TGACGTGGGGGAGGAAGATATCTAGTGTCAATCTCTGACCTTCATA320.10665955602959802No Hit
GCCTTGGGGGACTGCAGGACCGCTAGACGGACGACAACTTCTGCTC320.10665955602959802No Hit
TATTAGGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA320.10665955602959802No Hit
GCACTGGGGGGAGATGACCAAATTTACAATGTTATCGTAACTGCCC320.10665955602959802No Hit
AACTCCGGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGC320.10665955602959802No Hit
TTAACAGGGGCTTTTCATTGCAGGAGAAGAGGACAAAGATACTCAG320.10665955602959802No Hit
CAGCTTAGGCAGAGCGTCAAGCCAAGAACTTGCCCAAAGCTGACAA320.10665955602959802No Hit
GGCACAGTAGGCATCGAGGGCTTCTTCGGCTTCGTGATCCTCTCGC320.10665955602959802No Hit
CAATATGGGGGGGCCTGAGCCGAGCAGCTGCGCGACGTCATGGACA320.10665955602959802No Hit
TTGCGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTG310.10332644490367308No Hit
TAGTATGGGAAAACAAGCCAAAAAGAAAACAAAACAAACACAAAAA310.10332644490367308No Hit
CACCTAGGGGGGGAATTCAGATGTATATATGATGTCCTTGGACGGG310.10332644490367308No Hit
AACACAGGGTGGTATTTCAAAATTTGCTCAGTTTCATCAAGTTCTG310.10332644490367308No Hit
TTCAAGTGGGGAGCGGCGAGGCGGGGCGCAGCCGCGGGTTATAGGA310.10332644490367308No Hit
AAGTTAGGGGACCCTCGGTCCGGGACAAGTTTATCTTGTGACTGCT310.10332644490367308No Hit
TTCACAGGGAGACTGGAGGGGCGGGCCGGCTGGTGTCCCCTTTCCG310.10332644490367308No Hit
AGCCTTGGGACGAGGCGACATGGCGGCGGCGCTGCTGCTGGCGCTG310.10332644490367308No Hit
AGCAAGGGAATAGCCAAGTTCCTGAAAGTCTCCCTGGGGAAGTTGG310.10332644490367308No Hit
CTGCGAGGGGGTATCCAAGAAAGCCAAGGAAAAGAGAGAATCTCTC310.10332644490367308No Hit
AACACAGGGATTTTGTGAGGTACCACCTCAGAGCAGAGGGGAGGGT310.10332644490367308No Hit
TATTCCGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA310.10332644490367308No Hit
AAACCTGGGTCTTAGACAAACTGAAAGCTGAGCGTGAGCGTGGTAT310.10332644490367308No Hit
ACAGTCGGGGAGCCGCAGCGTGTCTCAGTCGGTTGTCGAGTCCCTT310.10332644490367308No Hit
CCGCGCGGGATGCCATCTACCTTCTTCAACCTCACCATAGCCTTCT310.10332644490367308No Hit
TTAACAGGGGGGATTGGCTGTAGCAGAGACACGGTGTCGTTTTTTT310.10332644490367308No Hit
ATTTTTGGGGCAGAGCGGAGAATGGGAGTAGAGCAGAGTGTCTGAA310.10332644490367308No Hit
AGTTTAGGGGGGCATTCTGGCGCGGAGCGCAGCAGCAGTGGGCGCA310.10332644490367308No Hit
CGCCTCGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA310.10332644490367308No Hit
TATCTCGGGCGATCTCAAAGGGGCTGCAGCTTAAACCTCGGACAGT310.10332644490367308No Hit
TGCTAAGGGAGATATAGCATTCCCACGAATAAATAATATAAGTTTT310.10332644490367308No Hit
AGATCAGGGGACTGGAGAAGGGAGGCGGCGGGCAAAGCGCACGTCG310.10332644490367308No Hit
AACTATGGGGGAGCTTAGGGCTGAGATTCATATGCAAAATACGTTT310.10332644490367308No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)