FastQCFastQC Report
Sat 31 Dec 2022
SRR5843319.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843319.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27539
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAGGGGATATGCTCCCCAACTCAACTGAGCGGGCAATCACTATT460.16703584008133918No Hit
ACAGTCGGGGAGCCGCAGCGTGTCTCAGTCGGTTGTCGAGTCCCTT440.15977341225171574No Hit
TGCAAAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC420.1525109844220923No Hit
ATCCAGGGGTGACTCCTACCACCATCATTTCTCCTTCTCCTAGCAT390.14161734267765716No Hit
TACAATGGGGGAAAGGATCTGCTGCTCCAGCTGGAGGACGAGACTC380.13798612876284544No Hit
ATCGCTGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG380.13798612876284544No Hit
TGTAGCGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC370.13435491484803372No Hit
TCTTTGGGGGGCTCTCTGCTCCTCCCTGTTCCAGAGACAGCCGCAT370.13435491484803372No Hit
TATCTCGGGCGATCTCAAAGGGGCTGCAGCTTAAACCTCGGACAGT370.13435491484803372No Hit
GGCACAGTAGGCATCGAGGGCTTCTTCGGCTTCGTGATCCTCTCGC370.13435491484803372No Hit
CATTCTGGGGTGCATGAGCTGACCCCACACCCTGAGCAGCTGGGCC370.13435491484803372No Hit
TTGCGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTG360.13072370093322197No Hit
AGCAAGGGAATAGCCAAGTTCCTGAAAGTCTCCCTGGGGAAGTTGG360.13072370093322197No Hit
ACTTCAGGGGAGGAAGGGACATGCAGCCGGAGGACCTCAGCTTGGC360.13072370093322197No Hit
TTTAGTGGGAGAGATGCTGGACTCGTTGTTGGCCATCGGTGGTTTG360.13072370093322197No Hit
GGGCCAGCTGATCCAGGCTGTGCAGCAGTGCATTGAGGCTGCAGGA360.13072370093322197No Hit
TGTTCCGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT350.12709248701841025No Hit
CGTGATGGGGGATTTGTGTTTCGTCATGAGATCAAGGACACCTTCC340.12346127310359854No Hit
TGTCTAGGGGCAGCTCCACCAGGGCCCGCTATCCACAGGAACCTTT340.12346127310359854No Hit
TATGCGGGGGGGAAGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGAG340.12346127310359854No Hit
GGCGGTGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG340.12346127310359854No Hit
TGAAGTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC340.12346127310359854No Hit
TTGGCCAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTT340.12346127310359854No Hit
AAAAACGGGACTGCGGTGTCTTCTCCCTTCAAAAGATCCATCTGAT340.12346127310359854No Hit
CATTCGGGGGTTTGCACGGAAGACAGAAAGAGACGAGCTCTTGAAG340.12346127310359854No Hit
CGGGGTGGGTCCGATCTTACGTGGGGGAAGCCCCGCCTCGACACCG340.12346127310359854No Hit
TCGTCGCGGGGAGGCAGTGCCTCGTGTATTTAGGCCGTCCACCACA330.11983005918878682No Hit
ACTCAAGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG330.11983005918878682No Hit
CTCCGCGGGAGAGGAAAAGTGAGCTGTGCTGTGGCTCCCGCGGCTG330.11983005918878682No Hit
CATGTTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA330.11983005918878682No Hit
CTTGCAGGGGAGCCGCTGCTGCTGTCGCGCAGTCCGCTCCTCCGCT330.11983005918878682No Hit
CACTCTGGGTACGATGTTTTGGCTAATCCCCCAGGACCAGAAGACC330.11983005918878682No Hit
CAACCAGGTGCACTTTTAGGAGATGACCAAATTTACAATGTTATCG320.11619884527397509No Hit
CGCAAGGGGAGACTTGGCGGAGGAGCGTTAGGCCGGGGCGCTCACT320.11619884527397509No Hit
CTACACGGGGGTCCGAGCGAGCGCGTCCTTGCTTCAAAGAGATAGT320.11619884527397509No Hit
TGTTTTGGGGGAGCTCCTTCCCGTGAATGGGGAATTCAGCCTGGAT320.11619884527397509No Hit
ATTTTTGGGGCAGAGCGGAGAATGGGAGTAGAGCAGAGTGTCTGAA320.11619884527397509No Hit
CTCAATGGGGGACCTCAGCTTGGCCTGACCCTGCTGTTAGGGACTC320.11619884527397509No Hit
GCTAACGGGGGAAGATCACGTGTCCAGAACGTCCGGCGCCCGCCCC320.11619884527397509No Hit
CAACGTGGGGTACGGTGGTGAGTTGGTGTGCTGGGCAGAGTTGGGG320.11619884527397509No Hit
ATAACAGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA320.11619884527397509No Hit
ATTACCGGGAGACTGGAAGCGAGGCTGTGCTGCTGGGATGCCAGCT310.11256763135916337No Hit
AGCCTTGGGACGAGGCGACATGGCGGCGGCGCTGCTGCTGGCGCTG310.11256763135916337No Hit
AGCTTTGGGGCCACTTGTAAATGTTTTGCAGCCAGCACCTGAGGAC310.11256763135916337No Hit
TACCGGGGGCCTTCCTGGCTGTGGCCATGAGCATCCTGGCCCCTGA310.11256763135916337No Hit
TCGCCTGGGCTCACAGAGGCACACCCTGACAGGCTTTCCCATTGCC310.11256763135916337No Hit
CTGGGTGGGGAAAGGGAACCTTCAAGGGGGTTCCAACACTATGCAG310.11256763135916337No Hit
AGTTTAGGGGGGCATTCTGGCGCGGAGCGCAGCAGCAGTGGGCGCA310.11256763135916337No Hit
ATCTGTGGGAGTACTCGCCGGGCTTCGCAGATGGCTTGCCCCGCTC310.11256763135916337No Hit
CGCCTCGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA310.11256763135916337No Hit
CGCACCGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA310.11256763135916337No Hit
CACAACGGGAGCCCATGCAGGAGCATCAGTAGACCTAACAATTTTC310.11256763135916337No Hit
AATCGGGGGTGAGACCAAGGGGGTTGCCTATGTGTACTTATTCACT300.10893641744435165No Hit
TGGTCCGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG300.10893641744435165No Hit
CGTAAGGGGTTCTTCCCTGGTAGGTTCCGGAAGAGCCGCGCACTCC300.10893641744435165No Hit
TCTCAAGGGGTGGCTTACATATGTGGTTCCAGTACTTAGGAGTGTG300.10893641744435165No Hit
CTCGCAATTGGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTC300.10893641744435165No Hit
AAGAATGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG300.10893641744435165No Hit
TGTTCTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA300.10893641744435165No Hit
TTATACGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT300.10893641744435165No Hit
CTCCCAAAGGGGGGAAGAAAGCCATTCCTGCCACTTTAATCTCGTG290.10530520352953993No Hit
TCACGAGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA290.10530520352953993No Hit
TTGTAAGGGGGATCTACAAAACAGATAGAGAAAAGTACAACAGAAT290.10530520352953993No Hit
ACTACAGGGGGCTCTTTCTTTATGCCTTAGATTTGAAAGGTGGCCC290.10530520352953993No Hit
TAGAAGCGGGGGGAATTCAGATGTATATATGATGTCCTTGGACGGG290.10530520352953993No Hit
TGAAGGGATGACAAACATACGAAAAACACACCCATTATTTAAAATT290.10530520352953993No Hit
ACTCGCGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA290.10530520352953993No Hit
TAAACAGGGGAGACCGCAGGGATGGCGGCAGGGCAGGGTGGGTGGC290.10530520352953993No Hit
CGCTGTGGGGGAGCCGCTGCTGCTGTCGCGCAGTCCGCTCCTCCGC290.10530520352953993No Hit
GCGCATGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA290.10530520352953993No Hit
GCCCATGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA290.10530520352953993No Hit
TGAAAAGGGCTTGTGTCAATCTGGACTCAGAGGAAGGAGTCAGCAT290.10530520352953993No Hit
CGAAGGGGGAAAGTATTTGAAGGAGAAATGCTCCATTATGAGCAAA290.10530520352953993No Hit
GGCTTGGGGGGGCGTCGTCCTGTTCGCGGAGGCTGCTAGCTGCCGC290.10530520352953993No Hit
TTTACCGGGCGATCTTGGCATGGGGGAAAGGCGCATTGATGCGGCA290.10530520352953993No Hit
CACCTAGGGGGGGAATTCAGATGTATATATGATGTCCTTGGACGGG280.1016739896147282No Hit
CTTCTAGGGGAATAAGAGCGGCGGCGGCGGCGGCGGCGGCAGCAGC280.1016739896147282No Hit
AACGTGGGGGGGGCCGTGTGCAGACCCGCGTGTGGCGCAGGCAAGG280.1016739896147282No Hit
CGCAAAGGGGGGGCAGTCATCTGGAGCCATCTTGGGTGGCTTCTCA280.1016739896147282No Hit
TGCATGGGGGGGTCCTTTTTGCCTGTCCAGACCCCGTCTTTCTATT280.1016739896147282No Hit
ATTACCGGGTACTTCAATCAGGCTTCCTATGACAGGCAGATCTAGC280.1016739896147282No Hit
AGGCATGGGGAAGATGGCTGCGCTCTTGCTGAGACATGTCGGCCGT280.1016739896147282No Hit
GCTATTGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA280.1016739896147282No Hit
TCATAAGGGAGAGTCTTCAGGAGCTGCGGCTGCTGCTGGCCGGTAC280.1016739896147282No Hit
TTACAGGGCTGGCACAGAGCCTTAGGACCTTGGTTCAACCCCAGCG280.1016739896147282No Hit
GCTAGGGGAGTGGCCGAGAGAACAAGGAGAATGGCGGCCGAGGCCT280.1016739896147282No Hit
TTATACGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA280.1016739896147282No Hit
TCGCAGGGGGTCAGATCTGGAGAAACAAGCAGGTGTTGGGAAATAT280.1016739896147282No Hit
GAAACCGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT280.1016739896147282No Hit
CAGCAGGGGGTGGGTGAGAACGAGCGGAGCAGGTTTGGCGTTCCTA280.1016739896147282No Hit
ATTCGCGGGCTTCCGATCTTGGATAGGGGCTCTATCTGCGGCGTGT280.1016739896147282No Hit
TTAACAGGGGCTTTTCATTGCAGGAGAAGAGGACAAAGATACTCAG280.1016739896147282No Hit
TACGAAGGGAGAAGGCTGGCGAGCAGCTAGCATGGCAGATGAGGAG280.1016739896147282No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)