FastQCFastQC Report
Sat 31 Dec 2022
SRR5843314.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843314.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17897
Sequences flagged as poor quality0
Sequence length46
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAAATGGGGAGCAGCGCTGCAGTCCCCTCCAGGCGCACCTGTCCC330.18438844499078058No Hit
AGATTAGGGCTTCTGTCCATCTGCAAAACAGCTGAGTTCCAAATGA320.17880091635469633No Hit
CGAACGGGGACAGAGACAAAGTAGGGTCAAAGAAAAAGGGGGAAGG320.17880091635469633No Hit
AGAGTGGGAGAGTGACAGAGCAAGAGGAGCCGTTTCCACTCTGGCC320.17880091635469633No Hit
TATCTAGGGGACGTAGCAACAGGGCTACCGCCGGGTCTGGAGCTGA290.16203833044644353No Hit
TTATGAGTCTCCCAGGAAGATCTGCTATCAGGAAGTGTCTCAGTGC280.15645080181035928No Hit
TGAACAGGGTGGGCAAGTTGGGCTGTCTGCTAAGCTGCGCAGGTTC280.15645080181035928No Hit
TACTGAGGGGGCGGAGTTTTATGGATCAGTGGAACATCCACAGACC270.150863273174275No Hit
GCTTAAGGGAGATTGGCGCAGGACAAAGTGTCGTCGCGTCTTGCTG270.150863273174275No Hit
CATAACGGGGACTGCAGGACCGCTAGACGGACGACAACTTCTGCTC270.150863273174275No Hit
AAACGGGGAAAGTGGTGGGACTCGCGTCGCGGCTGCGGAGACTAGA270.150863273174275No Hit
TGACACGGGGACTGACGGAAGTTAGAAGATGGCGGCGTCCGCAGTC260.14527574453819075No Hit
CAGGTGGGGATTCGTCGAGTGAGGCCGTCAAGACTTGGTTTCTAGT260.14527574453819075No Hit
TGCACTGGGCGGCTAGTTCCCGGCCATCCGCGGCTCGGTGGCGAAA260.14527574453819075No Hit
CATCATGGGAGAGCACATCCGGTTTTAGCAGAGCAGGGAAGCTCCG260.14527574453819075No Hit
ACAAAAGGGAGATTGGCGCAGGACAAAGTGTCGTCGCGTCTTGCTG260.14527574453819075No Hit
ACGTCTGGGGGGAGTGAATTGATCCGGGAGTTGAAGAGGGCTCCAA250.13968821590210648No Hit
TGATACGGGGAGGAAACAATAGAGGCCGCGCGCGCGGAGTGGAGCG250.13968821590210648No Hit
TTAATAGGGGGACTAGAGCCGGGCCTCGAGCTGCCGCCGTCCGGAC240.13410068726602223No Hit
TCATCCGGGGCAGAAGCGGGTCGGTCTGTACTCCCCGCTCCTCGCC240.13410068726602223No Hit
CTAGCAGGGACCATGTGGGAGATCATGACTCGTGGGCAGACGCCAT240.13410068726602223No Hit
GACAGCGGGATTCTAAAACAATGAAGGCAATGGTGGAATTCCGAGA240.13410068726602223No Hit
ATTACTGGGAAAGAAACAGTACCAATTTTTTCAAGGACAGACACTG240.13410068726602223No Hit
ATAGCTGGGGTAATATAGACTGCAGTGGGTACAGCTTTAACCCTGT240.13410068726602223No Hit
TGTGTGGGGGACTCGGCAAAATGAAGATTGAGGAGGTGAAGAGCAC240.13410068726602223No Hit
CTGCGGGGCACCCTGTCCAACCAGGATCATCAGTGGCTCTTCTCTC230.12851315862993798No Hit
TATGCGGGGAGGGAGAGAGTGTGAAGAGAATGCAAAAAGGAACTTG230.12851315862993798No Hit
ATGCCTAGGGACTGCAGGACCGCTAGACGGACGACAACTTCTGCTC230.12851315862993798No Hit
AACCAACGGGGGCTCCGCTTCAAGGGAGGCTCTCAGCGATACGTGC230.12851315862993798No Hit
CGTAACGGGGATCTCACAAAGGGGGAAGCGCATCTGTCCTGTGCTC230.12851315862993798No Hit
CCTAAAGGGGGGCTTGCTATATTTAACTTCTAGCTAAGGGAGGAAG230.12851315862993798No Hit
ACTTTAGGGGGTTCACCCTCGGACTCGGCTCCCACTGCTAGTGGCA230.12851315862993798No Hit
CATGTGGGGATTGCAGGAGAAGAGGACAAAGATACTCAGAGAGAAA230.12851315862993798No Hit
GACCTGGGGAGGGATGCGGGCGGCAGAGCGCGAGAGGCGGCGGCTG230.12851315862993798No Hit
ACCTAAGGGAGAACAACTGTACTTTTGTTGGATTAGCAAATCATGT230.12851315862993798No Hit
TTTCAGGGGGAGTGTAGAGGGAAGGCAGCGGGCTGAACTGAGCAGC230.12851315862993798No Hit
ACCCCAGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG230.12851315862993798No Hit
ATCGAAGGGGCGCAGAAGCGGGTCGGTCTGTACTCCCCGCTCCTCG230.12851315862993798No Hit
CTCTCGGGGAGTGCGGCGCTGTTTAAAGATGGCGGCGGAGGAACCT230.12851315862993798No Hit
ATGCCTGGGCTCACCTCGGGTCTTGTGTGTGAGTCTGTATCAGCTG220.1229256299938537No Hit
TAGCTAGGGGCCTGTTTCAAATAAACACTTTTAAGAGGGTTTTTTC220.1229256299938537No Hit
TTAGTCGGGGCAGGAAGTGGAGGAAAAGAAGCGGGAGCAGGAACTC220.1229256299938537No Hit
GATACAGGGGACACTGCAGGACCGCTAGACGGACGACAACTTCTGC220.1229256299938537No Hit
TTCATTGGGGAGCGCAGCCAGGCTGTGCATTAGCGACCTGCTGTCT220.1229256299938537No Hit
ATTGAAGGGAGGGGACCTTTTTGCCCTTGACCGGGACAGTTGGTGG220.1229256299938537No Hit
ATAAACGGGTCGCGGTAATAAAGGTTCCCGTAAAGCAGACTGTTAA220.1229256299938537No Hit
CAAATTGGGAGCGAGGAGAGGCCGCGACCGGGCAGAGACCGCCGGA220.1229256299938537No Hit
TTCTATGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG220.1229256299938537No Hit
GATAACGGGGGTCAAAGAAAAAGGGGGAAGGAACCAATCAGGAAGC220.1229256299938537No Hit
TTGTTCGGGGGCTGTCGCGCAGTCCGCTCCTCCGCTGCAGAGTCGT220.1229256299938537No Hit
CTAGTAGGGGGTGTGCTGAGTGGGGCCTGGACCCGGAGCGTTACCG220.1229256299938537No Hit
CTGCCGGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG220.1229256299938537No Hit
GTCATTGGGGGAAAGAGAGATGCCAAGTGAAGATGTTCCCACTCTC220.1229256299938537No Hit
TTTAATGGGGGAAACGTCACCCTAGGAGCATTAAAACTTCCTTTTG220.1229256299938537No Hit
TGCTTAGGGCTTCCGATCTGCCCCAGGGGATCTTTCCAGGGGGAGA220.1229256299938537No Hit
GATCTGGGGAAGATGATGTAAATTGGTTCATCAGTGACAAAGACAT220.1229256299938537No Hit
GAACCTGGGGACAGAAGAAGGAGACTGGAGAGACCAGGATCCTTCC210.11733810135776945No Hit
GTAATTGGGATTGTGGGGCTGGTCGGAGTGGACCAGTTCCTTGTGA210.11733810135776945No Hit
ATAATTGGGGCACGCTGTCGCAGCAGTGCTCGCAGCCGCTCTCTCC210.11733810135776945No Hit
CACCCGGGGAATAAGAAGTGGGAGCAGAAGCAGGTGCAGATCAAGA210.11733810135776945No Hit
AATTCAGGGGCGGACAGAGCATGCACCGTGCTCCCGGCACTTGGCA210.11733810135776945No Hit
GCATAAGGGAGGAAAACCAATTTAAAAAACCAGACTCCCTCCTTTG210.11733810135776945No Hit
GGTTCCGGGGATCAGCATCACCAGCAACAGCAGCAGCGGCGGTGAC210.11733810135776945No Hit
GTATTAGGGGGGCAGTAGTGCCCTCCCAGATTCTCCCTTCGGGCTT210.11733810135776945No Hit
TTCGTTGGGAGAGCACATCCGGTTTTAGCAGAGCAGGGAAGCTCCG210.11733810135776945No Hit
TCGCTACGGGGGGTCCGAGCGAGCGCGTCCTTGCTTCAAAGAGATA210.11733810135776945No Hit
CGCCCCGGGGGGAAGAGAGAGGGTAGAAGAGAGGGAAGGCCTCTCC210.11733810135776945No Hit
ACACCGGGGACCTTCCACCTGTTTATTGCTGCGTTTGTGGGTGCTG210.11733810135776945No Hit
ATACAAGGGAGTGCTGCCAACGCCCCGGCGGAGAAGCTGAGGACAA210.11733810135776945No Hit
GGCAATGGGTAAGAAAACGGGCTGAGCACACCAGTAAGCAGCACCC210.11733810135776945No Hit
TAAGCTGGGAGAGAGAAAAAGTAAAGGACAGAAGAAGGAGACTGGA210.11733810135776945No Hit
TTAAGTGGGGGACAGAGGGGAACAAGATGGCGGCGCCAAAGGGGAA210.11733810135776945No Hit
TCTTCCGGGGCGGTCCGAGCGAGCGCGTCCTTGCTTCAAAGAGATA210.11733810135776945No Hit
CGAATAGGGGAGAGAGAAAAAGTAAAGGACAGAAGAAGGAGACTGG210.11733810135776945No Hit
AATGCCGGGACACGCTGTCGCAGCAGTGCTCGCAGCCGCTCTCTCC210.11733810135776945No Hit
GCAAAAGGGCGGTCCGAGCGAGCGCGTCCTTGCTTCAAAGAGATAG210.11733810135776945No Hit
TTCATGGGGCAGAGCAGCTTGGAGGCTTCAGAGCGAGCTCGGTGGC200.1117505727216852No Hit
ATTTGCGGGGGCGCCTGCTCTCCTGCTTTTGCTACCCCGAGGACGA200.1117505727216852No Hit
GCAGCATGGGGAGAGCTCCGCAGCCATCTCGTCCAGAGCTAGAGCC200.1117505727216852No Hit
TTTCAAGGGGGAGGCGGCAGCGGTGGCGGCGGCTCCGGAGGCCGCA200.1117505727216852No Hit
TGCTATGGGGGCCGTCAGCGCCGCCATCTTGTGGGAGCGAAACCAA200.1117505727216852No Hit
CCAGAAGGGAGTAGCAGCGGCGCCGGTCCCGTGTGCAGGAGCTCCT200.1117505727216852No Hit
CACCTGGGGGCGCTGCGCCAGGAGCTGCAAGCACAGGCATCCATCG200.1117505727216852No Hit
TAGCTCGGGGGACCCAAGCCCTGCCTGACATGGTGGTGTCCCACCT200.1117505727216852No Hit
CATTTAGGGGAGAGGGGCGGGGGCTGAGGCCTGGGACCCGGGATCT200.1117505727216852No Hit
CTGCCGGGGGGGCCAGTAAGTGGTGTGGAGATTACGAAGGGACATA200.1117505727216852No Hit
CTTTTTGGGGAGTTCCGCGCAGCGCTCCGGAGCTGAAAGGACTGCA200.1117505727216852No Hit
TACTCAGGGGGGAATTGGGGGTGAAGCCACCGCGTTCTGCCCACAT200.1117505727216852No Hit
TCGTCAGGGGCGCGAGCGGCTGACTGAGCCTGGAGAGGAAACGGCA200.1117505727216852No Hit
CTAATGCGGGGACCACTAATTGAAGGAGTGAGAAGAGAACAGCTCG200.1117505727216852No Hit
GATCATGGGTTGCCAAAATGGAGCTGAAGTGGAAAGAACAAGTGAA200.1117505727216852No Hit
TCTTAAGGGGACAGAAGAAGGAGACTGGAGAGACCAGGATCCTTCC200.1117505727216852No Hit
CACACCGGGACTGCAACCAGCCAGCTCCCGCTCGAATCTGATGCTG200.1117505727216852No Hit
TTTACCGGGGAGGCACTTGCTGCCCTTGCGTGCCCTGTCACCAAGG200.1117505727216852No Hit
TCAGCGGGGTTTGACTATGGTGTCTACCTTCTGAACAAGAACATAG190.10616304408560093No Hit
GGCTATGGGGTAGGGAAGCAATGGCCGCTGACGAAGATGAGTTGAA190.10616304408560093No Hit
CTTTCCGGGGCGCAGAAGCGGGTCGGTCTGTACTCCCCGCTCCTCG190.10616304408560093No Hit
ATTGCAGGGAGAGAGAAAAAGTAAAGGACAGAAGAAGGAGACTGGA190.10616304408560093No Hit
ATGCATGGGGAGAAAAAGGAGAATTACCACAAGCATGCGTGTAGGG190.10616304408560093No Hit
ACAATAGGGCGGGCGAGCGGTCCGAGGGTCGGGGCGGCCAAGGAGA190.10616304408560093No Hit
AGCTCTGGGTCTGCATCACCATGTGCAAGAAACTTACAGAAAAGCT190.10616304408560093No Hit
CACCCTGGGGGGAGGAAGGGACATGCAGCCGGAGGACCTCAGCTTG190.10616304408560093No Hit
ACCGCGGGAAGGGAGCCAGTGGAGATTCCCAGGCCTTTTGGCTTCC190.10616304408560093No Hit
TTGCTTGGGGGTACAGTTGCTAACTTGTCCAGGCTTGACTTGAGCT190.10616304408560093No Hit
GCATAGGGGGAGGCGATGAATTGGGACGCAGGCGCGACCACAGGGA190.10616304408560093No Hit
GCCCCTGAGTTCAGTGCTGGAGCAGTACAAAGCAGACACACGAACC190.10616304408560093No Hit
TCCTATGGGCTGGAGACCATGCTGGAGAAGCTGCGCTGTGCCATTC190.10616304408560093No Hit
GTGATGGGACCGAGCAGCGGGGCTCCCATCTCAACCCCGAGCGGCT190.10616304408560093No Hit
TGCACACGGGGTGCCTGGGTAGGGGCACTGTGCCTGCTTCTGATTT190.10616304408560093No Hit
TCCGCTGGGGCAGAAGAATACGCCCAGCAGGAGGTGGTGAAGAGAT190.10616304408560093No Hit
CATCACGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG190.10616304408560093No Hit
AAAGCCGGGCGGGAATGCCAGAACAGTGGGCTCGCTTGCTTCAAAC190.10616304408560093No Hit
ACAATCGGGGCAGTTGGTGTAGTTAAAACCTCCTCTTCTGCTCCAG190.10616304408560093No Hit
CTATGTGGGGCAGGCGGCTATCCTCATCGGCGACAAGTCGGAAAAT190.10616304408560093No Hit
GTACAAGGGGGGACTCGCGTCGCGGCTGCGGAGACTAGAAGGAGGA190.10616304408560093No Hit
CGCACTGGGAGAGGCCAGGAGCGGCTCCGTTTGGCTTGGTGGCTGC190.10616304408560093No Hit
GCACAAGGGGTATGTCATCTATGGAACTGCCTCTTTCTTCTTCCTT190.10616304408560093No Hit
GTCAATGGGGATCTTTGTTGAGGGCGGATAAACTGCCGGGATGCAT190.10616304408560093No Hit
CCCCTCCAGCAGCGAGGAGTGCCCCGCCCACCTCCTGGAAGACCCG190.10616304408560093No Hit
TTGCAGGGGGATCCGGAGCGTGCTGCCCGGTCACCACCCGCCATGG180.10057551544951668No Hit
TCTTGTGGGGGCGCAGAAGCGGGTCGGTCTGTACTCCCCGCTCCTC180.10057551544951668No Hit
CAGCTTGGGGACTCAGAGAGAAAAAGTAAAGGACAGAAGAAGGAGA180.10057551544951668No Hit
TTGCGCGGGGCAGAAGCGGGTCGGTCTGTACTCCCCGCTCCTCGCC180.10057551544951668No Hit
ATTTGTGGGAGCGCCGGGGACTACCATCAGCAATAGAAGGCCCTAC180.10057551544951668No Hit
CTCGATGGGAGAGAGAAAAAGTAAAGGACAGAAGAAGGAGACTGGA180.10057551544951668No Hit
TGCGTGGGGGGGCTGGGCCCTGGTTGACTGCGACCCCAGCCTCACT180.10057551544951668No Hit
CTTGCAGGGACAGCAACTGCCCACCATGACCCTGCCCTACAGCCTC180.10057551544951668No Hit
CCAGTTGGGGGATCGCCATGACAACAGAGCAAAGCTCCGCGGTATC180.10057551544951668No Hit
TCGCCACGGGGAGAGAGAAAAAGTAAAGGACAGAAGAAGGAGACTG180.10057551544951668No Hit
AACTGGGGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCT180.10057551544951668No Hit
CTTTACGGGGCCCAGCTGCGAGGCCGGAAACCGCGCTGCACTGAGC180.10057551544951668No Hit
ATTGCCTTCCCTAGCAAGACCTCTGCCAGTATAGGCAGTCTCTGCG180.10057551544951668No Hit
CGTCCAGGGGTTTGAAGCCATGTGAGAGCTGTTCTTGTGATCCATG180.10057551544951668No Hit
ACACCAGGGAGGCGCAGCCGGAGCAGCGGGGGAGCGCTCGCTGGCT180.10057551544951668No Hit
AAACATGGGGGCGCAGAAGCGGGTCGGTCTGTACTCCCCGCTCCTC180.10057551544951668No Hit
TGGCCTGGGGTTCTCCAAACACAATGGAATTTCTTGTTCAAGAGCA180.10057551544951668No Hit
ATCACCGGGGCGGCGGCGGTGGCGGCGGCGGTGGCGGCGGCGGCGG180.10057551544951668No Hit
AACACAGGGTGGTAATTAGTTTAAAAAAAAAATTTAATGATTTCGA180.10057551544951668No Hit
TGTACTGGGGCGGGGCGGAGCGCTGAGCGCAGCCAGGCTGTGCATT180.10057551544951668No Hit
AATAAAGGGGAGAACAGGGGGTTAGCTGCAGCAGCCCAGCTTGCTG180.10057551544951668No Hit
CCTGGTTTTTCCCCAGTGGTAAGGAGGACCTGGATGTTTTCCCGGA180.10057551544951668No Hit
AAGGGGGGCATCATCTGTCCTTATAGCTCATTAGGAAGAGAAACAG180.10057551544951668No Hit
TTATAGGGGGCGGTCCGAGCGAGCGCGTCCTTGCTTCAAAGAGATA180.10057551544951668No Hit
GGTTATGGGCGTCGCATCGGTGGCAGGACTCCTGAGTATATTTCAG180.10057551544951668No Hit
AAACGGGGACTGTTGTATGGCTCCTGGTGTTTGCCTGCTCGGCTGT180.10057551544951668No Hit
GATTGTGGGGACTCAGAGAGAAAAAGTAAAGGACAGAAGAAGGAGA180.10057551544951668No Hit
GCGACCGGGGAGACTTGGTAATGGCGACGGGTTTGTCGGAGCACCA180.10057551544951668No Hit
GCCCTCGGGGAACTCCAAGAGTAGAAGCAGAAAGAGCTGTCAGCAG180.10057551544951668No Hit
TTGCGGGGGTCGCCGAGGGACTGCCATAGAAACAGAAACACAAAGT180.10057551544951668No Hit
CCTCTTGGGCGATCTATGCGCGGGGCAGTGCGAAGGGCTCGAAGAT180.10057551544951668No Hit
GTGTCTGGGGAGAGAGAAAAAGTAAAGGACAGAAGAAGGAGACTGG180.10057551544951668No Hit
GCCGAAGGGATGCCCTGACTGTTGTATGGCTCCTGGTGTTTGCCTG180.10057551544951668No Hit
ATCAATGGGATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCG180.10057551544951668No Hit
GCGCCGGGAGAGAGAAAAAGTAAAGGACAGAAGAAGGAGACTGGAG180.10057551544951668No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)