FastQCFastQC Report
Sat 31 Dec 2022
SRR5843313.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843313.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17244
Sequences flagged as poor quality0
Sequence length46
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATTCAGGGGCGGACAGAGCATGCACCGTGCTCCCGGCACTTGGCA320.1855717930874507No Hit
GGCAATGGGTAAGAAAACGGGCTGAGCACACCAGTAAGCAGCACCC310.17977267455346785No Hit
GCAGCTGGGAGTCCTCAGTCAGAGTTGAGAGACAGAGGTAACCTCC280.16237531895151935No Hit
AGCCTCGGGGGACGCGGGCTGTTCGCGTGGTCTCTGCTCCTGCCAC280.16237531895151935No Hit
CACCCGGGGAATAAGAAGTGGGAGCAGAAGCAGGTGCAGATCAAGA270.15657620041753653No Hit
TGCTATGGGGGCCGTCAGCGCCGCCATCTTGTGGGAGCGAAACCAA270.15657620041753653No Hit
AAAGCCGGGCGGGAATGCCAGAACAGTGGGCTCGCTTGCTTCAAAC260.1507770818835537No Hit
TAACGTGGGATGCCATCTACCTTCTTCAACCTCACCATAGCCTTCT260.1507770818835537No Hit
TGGCTGGGGGGCAGAAGCGGGTCGGTCTGTACTCCCCGCTCCTCGC260.1507770818835537No Hit
TCAGCGGGGTTTGACTATGGTGTCTACCTTCTGAACAAGAACATAG250.14497796334957086No Hit
AACTCTGGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCT250.14497796334957086No Hit
CTGTATGGGGTTGCCGGGCGAGCAAACGGAGCGGGCGGCGGGCATG250.14497796334957086No Hit
GCATAAGGGAGGAAAACCAATTTAAAAAACCAGACTCCCTCCTTTG250.14497796334957086No Hit
AACTGGGGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCT250.14497796334957086No Hit
TCGACTGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG250.14497796334957086No Hit
ATCAATGGGAGGCAGAGCCGGACAGCCAGGAAGCAGTGCAGCTTGG250.14497796334957086No Hit
ACAAAAGGGAGATTGGCGCAGGACAAAGTGTCGTCGCGTCTTGCTG250.14497796334957086No Hit
GCTCAAGGGGGCTGGTTGGACAGCGAACTCAACATGTTCACACACC240.13917884481558804No Hit
TTCGTTGGGAGAGCACATCCGGTTTTAGCAGAGCAGGGAAGCTCCG240.13917884481558804No Hit
AGAGTGGGAGAGTGACAGAGCAAGAGGAGCCGTTTCCACTCTGGCC240.13917884481558804No Hit
CTGTCTGGGGGACTCGCGTCGCGGCTGCGGAGACTAGAAGGAGGAC240.13917884481558804No Hit
GTCATTGGGGGAAAGAGAGATGCCAAGTGAAGATGTTCCCACTCTC240.13917884481558804No Hit
TTTAATGGGGGAAACGTCACCCTAGGAGCATTAAAACTTCCTTTTG240.13917884481558804No Hit
TCTTCCGGGGCGGTCCGAGCGAGCGCGTCCTTGCTTCAAAGAGATA240.13917884481558804No Hit
GCAGCATGGGGAGAGCTCCGCAGCCATCTCGTCCAGAGCTAGAGCC230.1333797262816052No Hit
CAACCAGGTGCACTTTTAGGAGATGACCAAATTTACAATGTTATCG230.1333797262816052No Hit
GTAACAGGGGCTTTTTCGCAACGGGTTTGCCGTCAGAACGCAGGTG230.1333797262816052No Hit
AGCTCTGGGTCTGCATCACCATGTGCAAGAAACTTACAGAAAAGCT230.1333797262816052No Hit
CACCCTGGGGGGAGGAAGGGACATGCAGCCGGAGGACCTCAGCTTG230.1333797262816052No Hit
ACTCCAGGGTGCCTCGAGACATCCTGATGGTTGTGGGAAACGAGAT230.1333797262816052No Hit
ACATGCGGGGAGCCGCTATCGCAGAGTGGTAGTGAGGCTGCGAGCT230.1333797262816052No Hit
ACCTAAGGGAGAACAACTGTACTTTTGTTGGATTAGCAAATCATGT230.1333797262816052No Hit
CGAACGGGGACAGAGACAAAGTAGGGTCAAAGAAAAAGGGGGAAGG230.1333797262816052No Hit
ATATGCGGGGGAGCTGGGCTGGGGAAAGGTGTTGCTGGTGAAGGAC230.1333797262816052No Hit
TAAGCAGGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCT230.1333797262816052No Hit
CTAGCTTGGGGAGTGAAAGCTCTAATTGATTTTGCAAGCATCTCCT220.12758060774762237No Hit
CGGCTCGGGGACTAGAGCCGGGCCTCGAGCTGCCGCCGTCCGGACA220.12758060774762237No Hit
GGCACGGCGACACCAGCTCCAAGAGGCCAACAGAAACAGGGATAAG220.12758060774762237No Hit
GCTTTAGGGAAGTTTGAGGAGCTGGAGCGGGCTGCTGGGGACCCCA220.12758060774762237No Hit
CATCATGGGAGAGCACATCCGGTTTTAGCAGAGCAGGGAAGCTCCG220.12758060774762237No Hit
CGCCCCGGGGGGAAGAGAGAGGGTAGAAGAGAGGGAAGGCCTCTCC220.12758060774762237No Hit
CATGTGGGGATTGCAGGAGAAGAGGACAAAGATACTCAGAGAGAAA220.12758060774762237No Hit
GTCTTGGGCGCCTTCCGATCTCGCAATGGGCGATCTTACTAAGGGG220.12758060774762237No Hit
AAATACGGGTCCGCTGGCTCGGCACAGACTGCGCTCCGCTCCACTC220.12758060774762237No Hit
CATAACGGGGACTGCAGGACCGCTAGACGGACGACAACTTCTGCTC220.12758060774762237No Hit
GTAAATGGGGAGCAGCGCTGCAGTCCCCTCCAGGCGCACCTGTCCC220.12758060774762237No Hit
AGATTAGGGCTTCTGTCCATCTGCAAAACAGCTGAGTTCCAAATGA220.12758060774762237No Hit
ACAGACGGGGACGGACGCCAGCACGCGTAGTGGCCGGGGCGAGCAT220.12758060774762237No Hit
ATAGCTGGGGTAATATAGACTGCAGTGGGTACAGCTTTAACCCTGT220.12758060774762237No Hit
CCTCTTGGGCGATCTATGCGCGGGGCAGTGCGAAGGGCTCGAAGAT220.12758060774762237No Hit
GATCTGGGGAAGATGATGTAAATTGGTTCATCAGTGACAAAGACAT220.12758060774762237No Hit
ATACCTGGGGGGTCTCATTGAACGCGGAGGCAGCTGCCGGGCATTC220.12758060774762237No Hit
GTTCATGGGGGAGAGACCTGGAGATTGAGCGGCCAATGCCTGGAAC220.12758060774762237No Hit
TGATACGGGGAGGAAACAATAGAGGCCGCGCGCGCGGAGTGGAGCG220.12758060774762237No Hit
TGACACGGGGACTGACGGAAGTTAGAAGATGGCGGCGTCCGCAGTC210.12178148921363954No Hit
CAGGTGGGGATTCGTCGAGTGAGGCCGTCAAGACTTGGTTTCTAGT210.12178148921363954No Hit
CTAGCAGGGACCATGTGGGAGATCATGACTCGTGGGCAGACGCCAT210.12178148921363954No Hit
TCTCATGGGGACTCTGTCCCCGGTAACCATAAAGATGGCCTGTTTG210.12178148921363954No Hit
CACCACGATTACTACATAATTGCCACATCAGACGGGACCCGGGAAG210.12178148921363954No Hit
ATTGCCTTCCCTAGCAAGACCTCTGCCAGTATAGGCAGTCTCTGCG210.12178148921363954No Hit
CACTTAGGGAGCTCCACCAGGGCCCGCTATCCACAGGAACCTTTCA210.12178148921363954No Hit
TTGTTCGGGGGCTGTCGCGCAGTCCGCTCCTCCGCTGCAGAGTCGT210.12178148921363954No Hit
ACACCGGGGACCTTCCACCTGTTTATTGCTGCGTTTGTGGGTGCTG210.12178148921363954No Hit
CTATCGGGGGGCAGCGGCGGCACGGACAGAATGCGGGTGATCGGCA210.12178148921363954No Hit
AATAAAGGGGAGAACAGGGGGTTAGCTGCAGCAGCCCAGCTTGCTG210.12178148921363954No Hit
TTTTTTGGGGGAGGGCCCGAGGCCCGGACATGGGGCCCACCAGCCC210.12178148921363954No Hit
CCCTTAGGCTGCCTTAGAAGAAAAACCAAGAAATGTAGTTTTTGTA210.12178148921363954No Hit
CTATACGGGCTTTTTCGCAACGGGTTTGCCGTCAGAACGCAGGTGT210.12178148921363954No Hit
TGAACAGGGTGGGCAAGTTGGGCTGTCTGCTAAGCTGCGCAGGTTC210.12178148921363954No Hit
GCAAAAGGGCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGT200.1159823706796567No Hit
CTGCGGGGCACCCTGTCCAACCAGGATCATCAGTGGCTCTTCTCTC200.1159823706796567No Hit
CCTAGTGGGGGTCTTTCCTTCCCTCCCTACCCGGCGGCTCCTCCAC200.1159823706796567No Hit
GCGAGGGTTCGGATCAAGATTCCAAATAGTGGCGCGGTGGACTGGA200.1159823706796567No Hit
TATCTAGGGGACGTAGCAACAGGGCTACCGCCGGGTCTGGAGCTGA200.1159823706796567No Hit
AGCTCCGGGGGCGGATGGCGGTGGCTGCGGCGGCAGCAGCTACAGC200.1159823706796567No Hit
ATTGAAGGGAGGGGACCTTTTTGCCCTTGACCGGGACAGTTGGTGG200.1159823706796567No Hit
CGCAATGGGGGAGAGCCCGGCCCCGCGCACGTGCCCGCCAGACCTG200.1159823706796567No Hit
TATGAAGGGGTAGCAGGCACATACCAGAATACGGCTCAGACTGTAC200.1159823706796567No Hit
AGCTTAGGGGAGCAGAGGAATGTCTACAAGGACCTTCGACAGATTG200.1159823706796567No Hit
CATACCGGGCAGAGAGAAAAAGTAAAGGACAGAAGAAGGAGACTGG200.1159823706796567No Hit
CGTGTTGGGGTGGTGGCTCTGCACTGGACTTGCTGAAACCTGGTCC200.1159823706796567No Hit
TGGAAAGGGGGACGAGGATGGGAAGCCTATCAGGAAGGGGCCTGGG200.1159823706796567No Hit
ACACCAGGGAGGCGCAGCCGGAGCAGCGGGGGAGCGCTCGCTGGCT200.1159823706796567No Hit
TAAGACCGGGGGGGAACTGGCGCGAGCTTGGCGACTAGGACCTTGT200.1159823706796567No Hit
CCTAAAGGGGGGCTTGCTATATTTAACTTCTAGCTAAGGGAGGAAG200.1159823706796567No Hit
GCTTAAGGGAGATTGGCGCAGGACAAAGTGTCGTCGCGTCTTGCTG200.1159823706796567No Hit
CTAGTAGGGGGTGTGCTGAGTGGGGCCTGGACCCGGAGCGTTACCG200.1159823706796567No Hit
CTTTTTGGGGAGTTCCGCGCAGCGCTCCGGAGCTGAAAGGACTGCA200.1159823706796567No Hit
CGATAGGGAACTCCAAGAGTAGAAGCAGAAAGAGCTGTCAGCAGAG200.1159823706796567No Hit
AATAGCGGGGGGCGGCGCCCCGCCCAGTCAGCAAGGTTGCGCGTGC200.1159823706796567No Hit
GCAAAAGGGCGGTCCGAGCGAGCGCGTCCTTGCTTCAAAGAGATAG200.1159823706796567No Hit
AGACCAGGGAGAGAGAAAAAGTAAAGGACAGAAGAAGGAGACTGGA200.1159823706796567No Hit
CAATGTGGGGACATAAACCGGCGCGGTGTTTAGACTTTACTGATGT200.1159823706796567No Hit
TTCCAAGGGAGTTGGTGTAGTTAAAACCTCCTCTTCTGCTCCAGGA190.11018325214567386No Hit
TTCCCGTCAAGATGCCTGAGGAAGTGCACCATGGAGAGGAGGAGGT190.11018325214567386No Hit
AAGCAAGGGCCTATGTTCATTAATCGTTGATTATTCTCAACCAATC190.11018325214567386No Hit
TTAGTCGGGGCAGGAAGTGGAGGAAAAGAAGCGGGAGCAGGAACTC190.11018325214567386No Hit
CCAGTTGGGGGATCGCCATGACAACAGAGCAAAGCTCCGCGGTATC190.11018325214567386No Hit
CACCTGGGGGCGCTGCGCCAGGAGCTGCAAGCACAGGCATCCATCG190.11018325214567386No Hit
GTAACTGGGGAGAGAGAAAAAGTAAAGGACAGAAGAAGGAGACTGG190.11018325214567386No Hit
ATAAACGGGTCGCGGTAATAAAGGTTCCCGTAAAGCAGACTGTTAA190.11018325214567386No Hit
CTACAGGGGATCCCAGAAATTGAAGACGTGTACAGCAGCCGCTACC190.11018325214567386No Hit
GTATAGGGAGCGCAGAGCGGTTTGGTCGTTCGTTGGTGGAGTATCT190.11018325214567386No Hit
AGATAGGGGGGGCGCTGCGTCGCATCGGTGGCAGGACTCCTGAGTA190.11018325214567386No Hit
CATTTAGGGGAGAGGGGCGGGGGCTGAGGCCTGGGACCCGGGATCT190.11018325214567386No Hit
GATAACGGGGGTCAAAGAAAAAGGGGGAAGGAACCAATCAGGAAGC190.11018325214567386No Hit
CGTCAAGGGATGCAGCCGGAGGACCTCAGCTTGGCCTGACCCTGCT190.11018325214567386No Hit
ACTTTAGGGGGTTCACCCTCGGACTCGGCTCCCACTGCTAGTGGCA190.11018325214567386No Hit
CTGCCGGGGGGGCCAGTAAGTGGTGTGGAGATTACGAAGGGACATA190.11018325214567386No Hit
CTTCACGGGATAGGCCATGGCCTTGACCCATATCGTATCTCTTCCC190.11018325214567386No Hit
ATACAAGGGAGTGCTGCCAACGCCCCGGCGGAGAAGCTGAGGACAA190.11018325214567386No Hit
ATAACTGGGACCAGCAATATCTTGAACAGGCTGCTGGTCAGTTATG190.11018325214567386No Hit
GCACTAGGGGCTCCCCGGAACGCGCGATGGAGCGAGTAGGAACGCC190.11018325214567386No Hit
ACAATCGGGGCAGTTGGTGTAGTTAAAACCTCCTCTTCTGCTCCAG190.11018325214567386No Hit
GCTGCTGGGGGTTTCATGTTGATAATAGTGGGTACTGCACTAAGTA190.11018325214567386No Hit
GCTGCTCAGCCTCCGATTTGAAGCCTTTGAGGAGGACCGCTGCTTC190.11018325214567386No Hit
CTCTATGGGGCTCCAGCACCAGCAGCAGCGCCGCCGCCACCGCCCA190.11018325214567386No Hit
AGCTCAGGGCTCCATCACCACCCCCAGAGGAAGCCCAAAAGGCCAA190.11018325214567386No Hit
ATATAGGGGGTACAGAAAAGCTAATTGAGACCTATTTCTCCAAAAA190.11018325214567386No Hit
TACGGTGGGGTACAGTGATAAGCTTCAACATTACAGCACAGGCCGA180.10438413361169101No Hit
AACACTGTGCCTCCTTCCCCGATGACGTTCACTTGACCATGGCTTC180.10438413361169101No Hit
GTATCTGGGGAGAGCGAGCGGCGCCGGCGTCATGTGACTGCCCAGA180.10438413361169101No Hit
CTCCCAGGCTGGTCACTGTCGAATAGAAGTCTCCAGAGAAGAGATA180.10438413361169101No Hit
ATGCATGGGGAGAAAAAGGAGAATTACCACAAGCATGCGTGTAGGG180.10438413361169101No Hit
AACTGCGGGGATCTTGTTGCGGGATGTCAATCAGATATTTAAAGAT180.10438413361169101No Hit
GTTGAAGGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCT180.10438413361169101No Hit
TGGGTAGGGGATTCTCATAAATAAGGAACTCCATTCCATACTGCGC180.10438413361169101No Hit
CGTAAAGGGGGGGTGGGAATTATATCTTTCCTACTAATTGGATGAT180.10438413361169101No Hit
GATACTGGGGGGCCCTCCTGCTGGCTGAGGGCTTCTACACCACCGG180.10438413361169101No Hit
TGCACTGGGCGGCTAGTTCCCGGCCATCCGCGGCTCGGTGGCGAAA180.10438413361169101No Hit
GTATGTGGGGAAAAGATGGATGGGCTGATACCAGTCTTTAAAAAGA180.10438413361169101No Hit
TACTTAGGAGAATGGTGTTCATTAATCTCATACCCCATAAGTAAGA180.10438413361169101No Hit
GGTTCCGGGGATCAGCATCACCAGCAACAGCAGCAGCGGCGGTGAC180.10438413361169101No Hit
CTCGTCGGGTACGTAGGCGCATTCAAGTGTCTGAAAGATGGCGGTG180.10438413361169101No Hit
GCCCCTGAGTTCAGTGCTGGAGCAGTACAAAGCAGACACACGAACC180.10438413361169101No Hit
AAACACGGGGGCGGTGCAAAGAGGTCGGTGCGCAGCTCGCATCACG180.10438413361169101No Hit
ACTAACGGGAGGGTTGTTCACTTACATGCGCAATTAGTAATGATTG180.10438413361169101No Hit
GACCTGGGGAGGGATGCGGGCGGCAGAGCGCGAGAGGCGGCGGCTG180.10438413361169101No Hit
TCCGCTGGGGCAGAAGAATACGCCCAGCAGGAGGTGGTGAAGAGAT180.10438413361169101No Hit
TGCTTTGGGGCACCGCTTCCCTGAGAGCTGTCGCCCGTGCGCCTCC180.10438413361169101No Hit
TGTACTGGGGCGGGGCGGAGCGCTGAGCGCAGCCAGGCTGTGCATT180.10438413361169101No Hit
GATCATGGGTTGCCAAAATGGAGCTGAAGTGGAAAGAACAAGTGAA180.10438413361169101No Hit
ATAGTTGGGGAGCCGCCTGGATTCCGCACTCAGGGCCTGATGGCTT180.10438413361169101No Hit
TCTTAAGGGGACAGAAGAAGGAGACTGGAGAGACCAGGATCCTTCC180.10438413361169101No Hit
AACCCAGGATATGAAATGACAACGTCAACCCTCCAGAAAGCCATCG180.10438413361169101No Hit
TACGCTGGGGTCTCCATCAAAGAAGAGCTGGACATCTGAGCTGCCC180.10438413361169101No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)