FastQCFastQC Report
Sat 31 Dec 2022
SRR5843310.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843310.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34903
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTATGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAAC460.13179382861072114No Hit
AAGTTTGGGCGACGGCCGCGATTACATCGCCCTGAACGAAGACCTG460.13179382861072114No Hit
CGTATAGGGAGACGTTCGTGGTGGAGTGAGAGGTTCCCAGGGGAGG430.12319857891871758No Hit
GGACATGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG430.12319857891871758No Hit
CTCGTTCCGGGGAAGATCTTGAGGGTGATAAATGAGCCTACAGCAG420.12033349568804973No Hit
GTCAGGGGGATCCAGTGTCTGCCCGATATTGGTTTGCCATGGAACG410.11746841245738188No Hit
CATGATGGGGATCTCGGTTAGGGATCAGACGATGTCGGACACTACC410.11746841245738188No Hit
CGAGAAGGGTTACTCCAGATGAGCAGCAGCCCTCAACAGTGTGTTG400.11460332922671403No Hit
AACAATGGGATGGCGGCGGCGCTGCTGCTGGCGCTGGCCTTCACGC400.11460332922671403No Hit
TTGGGGGGATCTCCTCGACGGGTCCTGCATGGTGGAAGAGTCGGGA390.11173824599604619No Hit
GCCAAGGGAGATCAAGCGGTGGTACAGCAGGCTGCGCAGCAAGTAC390.11173824599604619No Hit
TTAATAGGGACATCGACATCCGGGAGTCTGATTGCCTGTGGCTGTT390.11173824599604619No Hit
CCAAGCCACACAGCTATTCTTTGGCCAGACCCTCACTACAGTAACT380.10887316276537834No Hit
CACAGAGGGAGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTT380.10887316276537834No Hit
ATCCGGGAGATGGAGAGAATGGGAGGGAGGAAAATGGGAAGAGGGA380.10887316276537834No Hit
ATAGCAGGGGATACAGGGCGGGGCTCGTCACCGGGTCCGGCAGCTG380.10887316276537834No Hit
AAGACAGGGATCTTCTCTAATGAAATTCCTGACCAGACATCCCAAT380.10887316276537834No Hit
GAAGTTGGGATGAAGGTGGCCGAGCAGACACCGCTCACCGCGCTCT380.10887316276537834No Hit
CAATGCGGGGTGGCGAGTGGGAGGTCTTGTCGAGGCATGGCTCCAA370.10600807953471049No Hit
TGGCACTGGGAGAAACCTTGTGGGCAGAAGCATCGAGCGACCTCTG370.10600807953471049No Hit
GCCAATGGGCTGTTCAAGAGAGTTTAGAGAGAAAGTTTGGAAAGCA370.10600807953471049No Hit
ACTTCAGGGGAAAACCAATGTTTTATGAGTTCAGCTCACTCTTCAG370.10600807953471049No Hit
GTAATGGGGTTTGTGATGATGTCTAGATTTCTGTGAGAAATGAGGA370.10600807953471049No Hit
CTTCCTGGGGAGGCACTACTGGGGCAGGCAACCCCGCCCAGCACAG370.10600807953471049No Hit
GGCTTCGGGAGGCAGCACACTGGGAAGTTGCCAAAGGAAGGGACTC360.10314299630404264No Hit
TTATGAGGGAGGCGACATGGCGGCGGCGCTGCTGCTGGCGCTGGCC360.10314299630404264No Hit
TTCTACGGGGGGGCAAGAGCGCGGCACGGGACTGTGCGCGCGGCGC360.10314299630404264No Hit
GGGTCCGGGGATCGTCAGGCAGAGATTACCCGACTCCTGCTTGAGG360.10314299630404264No Hit
AAGCAAGGGGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTG350.10027791307337479No Hit
CTGGAAAGGGGGCCTAATTCACCTAGCAGCCCAGTTCAGCTCAGAG350.10027791307337479No Hit
TTTCGAGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA350.10027791307337479No Hit
ACGACAGGGGTTCAGTCGGATCCCGGCAGCAGCTGCGGCGGCTCAG350.10027791307337479No Hit
CAAAGCGGGGAGCTGGAGGAAAGATGGCGGCTGCCGTGCGACAGGA350.10027791307337479No Hit
GCGTAAGGGCACAGAAGACAGTGGTAGTTGCCCATTTAGACCCAGC350.10027791307337479No Hit
TATAGTGGGATTGTGAGTAATATAGATTGGCGCTAGTAGATCACAG350.10027791307337479No Hit
TTTTATGGGGAGTCCACATCTGACAGAACTTGCCACTGTGCCTGCA350.10027791307337479No Hit
AATGGGGACCCAATTGGATCTCCTCAGCATTTTCTTTCTTTAAAAA350.10027791307337479No Hit
TGCTACGGGGATTCCGGAAGTGAGGGCGACCCAGATGCGGCCACGG350.10027791307337479No Hit
CTCTCAGGGGAGCATCGAGCATCGGTCGGAGCTGCTGCCAGCCAAC350.10027791307337479No Hit
GCACATGGAACTGCTCTACTCAGAGCTCATCAGTCCCATGAGCGTG350.10027791307337479No Hit
TTCATAGGGAAGCAGGACACTGGGAAGTCGATTGGCCAACTTTGTT350.10027791307337479No Hit
TATCAAGGGAGCATACGCATGGTCTCTGGCCCCATTTGATGGGGGT350.10027791307337479No Hit
CTCACAGGAGCGGTCAAACAGTATGTCCCAAGGGGACTTAAGCGCG350.10027791307337479No Hit
CATTCAGGGAGACTTGAAGAGGGTCCAGACACTTCTGGAGCTGGAG350.10027791307337479No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)