FastQCFastQC Report
Sat 31 Dec 2022
SRR5843309.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843309.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33165
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAAGCCACACAGCTATTCTTTGGCCAGACCCTCACTACAGTAACT500.15076134479119555No Hit
CGTGCTGGGGAAAAGTATAGATAAGTACATTTTGTTAGTATATAGA470.1417156641037238No Hit
CATAACGGGGTCCTGCTGCCAGGGACATCTTTGGAGTGAGCACCAC460.1387004372078999No Hit
TATAGTGGGATTGTGAGTAATATAGATTGGCGCTAGTAGATCACAG440.13266998341625208No Hit
TGATCTGGGGGAAGCGCTCTCACTTTTTTTCAGGCAATGTTGCTAG420.12663952962460426No Hit
CATGATGGGGATCTCGGTTAGGGATCAGACGATGTCGGACACTACC420.12663952962460426No Hit
AAAACAGGGGAGCGGGTAGCAGCTGCTTTCCGGCAGACGTTTTCCG410.12362430272878035No Hit
ATCAGGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT410.12362430272878035No Hit
CTCGTTCCGGGGAAGATCTTGAGGGTGATAAATGAGCCTACAGCAG400.12060907583295642No Hit
TATTTGGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC400.12060907583295642No Hit
TGCAACGGGATTCCAGGAGAGCAGCATTTCTACATGAAGGCAGTAA400.12060907583295642No Hit
GGACATGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG390.11759384893713253No Hit
TTTTATGGGGAGTCCACATCTGACAGAACTTGCCACTGTGCCTGCA380.1145786220413086No Hit
GTATCAGGGACCTTTTGGAGGAAAGGCATCCTTTAAGCTCTCTCTG380.1145786220413086No Hit
CTCAATGGGGGTTCCCATAATGCCTTGTTTTCTTTGGAGTCGAAGG370.1115633951454847No Hit
GTCAGGGGGATCCAGTGTCTGCCCGATATTGGTTTGCCATGGAACG370.1115633951454847No Hit
CTTCTGGGGAACGCCCCGGCGGAGAAGCTGAGGACAAGATCTAATT370.1115633951454847No Hit
AACTAAGGGGAAAATGTCTATTTGGAATAAATGGCCCAAGCAATGT370.1115633951454847No Hit
ATCGCCGGGGAGTCTGAGTTCCAGGCATGGAGGCAGGCGGGCTGGG370.1115633951454847No Hit
TTCCTGGGTCAATGCAAGTTTTTATTGGAATGGTTCTAATATGTTT370.1115633951454847No Hit
CTAGAGGGGGAGGCGACATGGCGGCGGCGCTGCTGCTGGCGCTGGC370.1115633951454847No Hit
CGACATGGGGGCTACACTTTTAAACAACCTCAAAGTTCAGGAAAGG370.1115633951454847No Hit
GCCATAGGGGCCAATGCCTCTGTTGATGACAGCCGTCTTGAGGAGC370.1115633951454847No Hit
GCGTAAGGGCACAGAAGACAGTGGTAGTTGCCCATTTAGACCCAGC360.10854816824966079No Hit
TAAGATGGGGCTGTGGTTGGGACACTTCAAGCTGTGTTGGACTTAA360.10854816824966079No Hit
ACCATGGGGAGGGTGGCTTCATTGGTGATTGACCCTAGGCTGGGCA360.10854816824966079No Hit
GACCAAGGGGCCGGCGGCGGGGCAAGGAGGGCAGCCCGGAGGGCAG360.10854816824966079No Hit
GGAGGTGGGGAGTCTGCTTCTTTTTTCAGGCAGGACAGCGAGATTC350.10553294135383687No Hit
TTGGTTGGGGAAGATTGACAGCCTAGGTAGTGGAGATGAGAAGAGA350.10553294135383687No Hit
AGAGTCGGGAGCGCTGCCTGTGGCTGAGTCTGTGCTCCTGCTGTGC350.10553294135383687No Hit
CCGTAGAGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA340.10251771445801297No Hit
GTTATAGGGGTATCTAATTTTAGCTGGTTGCTGTTGGGGAAGTTTT340.10251771445801297No Hit
TTCTACGGGGGGGCAAGAGCGCGGCACGGGACTGTGCGCGCGGCGC340.10251771445801297No Hit
GCCAATGGGCTGTTCAAGAGAGTTTAGAGAGAAAGTTTGGAAAGCA340.10251771445801297No Hit
AAGTTTGGGCGACGGCCGCGATTACATCGCCCTGAACGAAGACCTG340.10251771445801297No Hit
CTACAGGGGTCAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTT340.10251771445801297No Hit
TACGTCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA340.10251771445801297No Hit
TATCAAGGGAGCATACGCATGGTCTCTGGCCCCATTTGATGGGGGT340.10251771445801297No Hit
CTGCGTGGGAATGTAAATATTAGAAAGTAATATGGATAAATGACAT340.10251771445801297No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)