FastQCFastQC Report
Sat 31 Dec 2022
SRR5843304.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843304.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31875
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGATAAGGGAGGAATAGACACACTGTTCCATTGGGATTTGATTCAT410.12862745098039216No Hit
CGCGCAGGGGAAGGCTAAGGGTGACTGACTGCCCAGTGCATGGATC350.10980392156862745No Hit
CCTAGCGGGGGGAACCGGGCGGGCCCATTCCAAACTGCGGCTGTGG340.10666666666666667No Hit
CATTCAGGGATGCCCAGACAGCAGATTCTGAGGTCCTTTGAAGGTG330.10352941176470587No Hit
AAGTTCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC330.10352941176470587No Hit
TCAGCTGGAAGCCTGTGGCCGAATACATCGACCAGCAGTTTGAGCA320.1003921568627451No Hit
TGTATAGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG320.1003921568627451No Hit
CTGACTGGGACTCCAGCATGATTTGTCATCTAAAGACTTGAAAACA320.1003921568627451No Hit
GCTTCTGGGGCTCTTTTTCGTGACGCCTCCCAGGCGCTCGGCTGTG320.1003921568627451No Hit
TAATAGGGTGGTGGTTGGTTTTTAACCCAAACTCAGTGCATTTTTT320.1003921568627451No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)