FastQCFastQC Report
Sat 31 Dec 2022
SRR5843303.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843303.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30297
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCGTGGGCTCCAGCAGCCTCCCAGAGTCTTGGCCAGATCTGTAG370.12212430273624451No Hit
CGATAAGGGAGGAATAGACACACTGTTCCATTGGGATTTGATTCAT350.11552298907482589No Hit
CGAAAGGGGCTAGACGACAAACCCATCAAGAGGAGACGTCCCAAGA340.11222233224411658No Hit
ATTACAGGGCTGCAGAGGCTGACAGCAGCAGGAAGGCTTCTGCCAG330.10892167541340728No Hit
TAGCCGGTGACCATTAACTGGAGCCTTTTCAGCCCTCCTTCTAACA310.10232036175198865No Hit
TCATTGGGGACCTCGGCCAAGAAAATTATGCATGCGTTAGGCAAGC310.10232036175198865No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)