FastQCFastQC Report
Sat 31 Dec 2022
SRR5843294.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843294.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20104
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAACGGGATGCCACAACTAGATACATCAACATGATTTATCACAA420.20891364902506965No Hit
AGCAACGGGGGCTTGAGTCAGTGGGTAAGAGGCCCCCGGTGGTGCA370.18404297652208515No Hit
TCACAGGGGGATCTCTTACGGGGATACATAATTCCATTAAGTGGTG370.18404297652208515No Hit
TACATGCGGGATCACAGAACAACCGCCGCATACGGCCGATTGTCGC360.17906884202148826No Hit
CATAAGGGGAACCTGATGGCCCTGGTGGCCAGAGTTGACAGTGTGG330.16414643851969757No Hit
TCGTCTGGGGTAGCTATGCTCTTGCTTCTGGGTCTGAGCTTGGTCC330.16414643851969757No Hit
GCTTGGGGGCTTCTTCTTCTTCGGGAAAACACCAAATGGCGGATGA320.15917230401910068No Hit
CAGCTTGGGGAGACAGTAGGGGGTGGTAAACTAAAGGGAAGTTGAG320.15917230401910068No Hit
CTCCAAGGGATCATCAAAGTGGGAGCATGGTAGCATCTAGGCAGGC310.1541981695185038No Hit
CCAAGTGGGGATCTGTGCATGGGATGTACCATCTACCATAATATTT310.1541981695185038No Hit
CTCACCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC300.14922403501790688No Hit
CTGAGGGGACTTAAAGTTTATGTTCCTGCTGACTTTGAGCTATATG300.14922403501790688No Hit
GTTCACGGGAACCTAAACAGGTTGATAGGTCAAATTGTGTCTTCCA300.14922403501790688No Hit
AACCTTGGGATAGTGTTCTTTATTAATATCCTAACACTCCTCGTCC300.14922403501790688No Hit
CATGCTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT290.14424990051731No Hit
TAAATGGGGGATCTCTCTTTGGGCTGAACTCGGATAGGTCTCAGAA290.14424990051731No Hit
CCTCTAGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAGT290.14424990051731No Hit
TAGCTAGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC290.14424990051731No Hit
CATTCAGGGGTGAAAGGACATAAGCTAGTACAAGCCAAACCAGAAC290.14424990051731No Hit
ATTACTGGGATAGATATATATATAGATACATTTCCCAGTACCCTGA290.14424990051731No Hit
TTATATGGGGAGTCCCCATTGCGCTGGCCTCCACTTGCCTACTTGG280.1392757660167131No Hit
CATCGGGAGCCCTTTAACATGAACCTACTGTCCAGAGGGCATTTTT280.1392757660167131No Hit
TTCTAGGGGCCCTCTGTCTACGCAGCACTGAATCCGCACCCAGCAG280.1392757660167131No Hit
GCGGGTGGGAAACCAAATAAATTTCAGGGAGTAACATGTTGTTCAA280.1392757660167131No Hit
GCTCTAGGGACATTTGGTTATATCGCAAAGGCTATTGGCCCTCATG280.1392757660167131No Hit
TTAACGGGGGCGGGAATGGGTGGCTCCGGAGAAAGCTGACATTATT280.1392757660167131No Hit
TAATAAGGGATTTCTTCAATTTTATGATGGCAGTGCTACAGATGCT280.1392757660167131No Hit
TTTAACGGGACCGGGGTTTCTACTCCTGTACCCTCTGCAGGTGGAG270.1343016315161162No Hit
AATCCGGGGGGAAGTGGGCAATCTGTGGCTACTTATACAACACATT270.1343016315161162No Hit
CAAGTGGGGATTATTTGTTTTCAATGTATAAAGGCAGTATTTCCCT270.1343016315161162No Hit
CACGTTGGGGGAGCAGTATGAGCAAAAGGTGAATGCATCCGCCCCG270.1343016315161162No Hit
CAACACGGGCAGTAGGCCCAAGTATGGCCTGTCCCCACCTCTACTA270.1343016315161162No Hit
CTTCTCGGGGTCTGCCGCTGAGGAGCACCTGGAAGTCCTTCGAGAG270.1343016315161162No Hit
ACACGCGGGGAGAGTGAACCGCGGAGAAGGTGAAGATGGCTGCCGC270.1343016315161162No Hit
CATTCTGGGGTAAATACCTGGTGCTAACATCCCATGCCGCTCCCCC270.1343016315161162No Hit
ATATCTGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG270.1343016315161162No Hit
AGTTGCGGGGAAGTCGGAGAGCTTGCAGTTGCAGCTAGTTCTTACC260.1293274970155193No Hit
TCTTTCAGGGGGGACCCAGAACATTCGACTGAGCCGGGACGCTGTG260.1293274970155193No Hit
TTAGAGGGGGGATTCTGAGCCCGGGCATCGCCCCTCGTTTATGAAC260.1293274970155193No Hit
CTTAAAGGGATAGTTCACAGTGTGCTACTCAACAGTTTGCCATCTG260.1293274970155193No Hit
TTTCCCAGGGAAGCAGAAACGGGATGTAAAATAATGGTCCGAGGCA260.1293274970155193No Hit
CAAGATGGGGTGTGATAAGTGTGGCAAAACTTTCAGTCAGAGTTCC260.1293274970155193No Hit
CTGTTGGGGACCACATCATTGTCCAGCTGGGAAACATGAGCAAGGA260.1293274970155193No Hit
ATAAAGGGGACTGTGGCGAGTTTGACAATGCAGGCGCCATGATGAG260.1293274970155193No Hit
TCGCCATGGGGATTATAGAGCACAAGTCCATCATCTGCCCAGGGTA260.1293274970155193No Hit
AGTAAAGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA260.1293274970155193No Hit
GCACCGGGGATGGCTCTGCTGTGGCAGATAAACTGGACAACAGCAG260.1293274970155193No Hit
CATGCATGGGGTGGTTTCAGAAAAATTTGATTATATTAAGTCAGGT260.1293274970155193No Hit
TATTATGGGGCATTCTTACATTAGTTAAGCTAAGCAGCAAAAAGAA260.1293274970155193No Hit
CTTTAAGGGAGGAGCCAGAGTTGAGATGACTTCAAAACAGCAGGAA260.1293274970155193No Hit
GATCTTGGAATTTACCCAAGATGACAGCGTTAAGAAATACTTCGCC250.1243533625149224No Hit
GTGCACGGGGTAAAGAGGATACTCAGAAGACCAGCGAAGAGAACCT250.1243533625149224No Hit
AGATAGGGACCTCGGCTGATCTTCGGGTTCCCTCGGCCCGCACTCC250.1243533625149224No Hit
CCTTCTGGGAGACCACAGTGCCTTGACTTAACCCACACTGCCAACT250.1243533625149224No Hit
CTTGTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT250.1243533625149224No Hit
TTTTAAGGGATCCATCAACTGGTCCAACTTTAGCTTGAAGAAAGCC250.1243533625149224No Hit
ATTAAGGGGGAACACATGAACATGAGTTTGCTTCCCAGAAGGCATG250.1243533625149224No Hit
TACACTGGGCACTCCACTTGGCTGTGATCACCAACCAGCCAGGAAT250.1243533625149224No Hit
GACCTTGGGACACCTCAGGTCACTTGCTGTGTGGTGGGGTCCTCAT250.1243533625149224No Hit
TTTAGCGGGCCGCTTGTACTGTTTGGAAATGACCTACTGGAATTGC250.1243533625149224No Hit
ATCAAGGGGGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAG250.1243533625149224No Hit
TATTAGGGGATCTCAAGAGCTGCTAGCCGTGGGGACCATTCCTTTT250.1243533625149224No Hit
GCACAAGGGGGTGACATGTTCTCACTCACAGCGGGAAAAGGGACAA250.1243533625149224No Hit
AGTCCCGGGGTATCCCCTCTCTCTGTCCTATCATGCCCACGTCTGC250.1243533625149224No Hit
GTTTTCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA250.1243533625149224No Hit
CTGTCTGGGAGATGGGTTTGTGCCTTGCTACCCTCTCTTGCAGCTT240.11937922801432552No Hit
CTAGACGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG240.11937922801432552No Hit
TTATGAGGGGGCAAGGGCAAAATGAGAAACCGACGGCGGATCCAGC240.11937922801432552No Hit
GCAAAGGGACCACCATCCCCACCAAGCAGACACAGACTTTCACCAC240.11937922801432552No Hit
ACCAGTGGGACGGCAATTAGGGAGCACAGTGCCTGTATAGACAAAG240.11937922801432552No Hit
GGCCAAGGGGTACTCGCTTCCAGCCGCCTTTACAAGTCTCTCCAGT240.11937922801432552No Hit
ATTCTGGGATTGGGGGAGTCCTTGTTGTCCTTATTGTTCTTGCTGT240.11937922801432552No Hit
AGCCGTGGGACTCCACTTTCACCCTGAACCTCTCCTGCTGCCGGGA240.11937922801432552No Hit
CAAAGGGGGAAGGCCAGGGTTGGATAAAATAGCTCTGCTACTGGAT240.11937922801432552No Hit
ATCTGTGGGGAGTGTCCTTCACGGAACAACCAGCGACTGCGTGAGC240.11937922801432552No Hit
CTACATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC240.11937922801432552No Hit
CCCCCCGGCCCAGGGTCAACAGTAGCACATACTATTCACATTATGA240.11937922801432552No Hit
CAAACTGGGGCATCCCAAGGAAAACATCATTGCTGTAGCAACTACA240.11937922801432552No Hit
AGTACCGGGAATATTGGAACAGGGTTTCACTGTACCAGTACTAATT240.11937922801432552No Hit
AAATAGGGGATGCCACAACTAGATACATCAACATGATTTATCACAA240.11937922801432552No Hit
GACTCTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA240.11937922801432552No Hit
AGTTGAGGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCT240.11937922801432552No Hit
AGTTAAGGGACACCGGGCTGCGCGCCCCGAGGACTCGGCGACCGCC230.11440509351372861No Hit
CATTTCGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT230.11440509351372861No Hit
ACCATTGGGGGAGCACCCCTTCCTTCAGAGGGGATTACGATCTCAT230.11440509351372861No Hit
TTAGCCGGGATGTCAGCATGCCAGCAGAACCTCTGGACTCTAGCAC230.11440509351372861No Hit
GGCTCTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT230.11440509351372861No Hit
AACTGAGGGCAGGGATTTATTTCCTATTTTATACCCTAATCGGTTC230.11440509351372861No Hit
CTTGTGGGGAGTGATGAGTGTGACAGCTCAGCTCTTTGATTTCATA230.11440509351372861No Hit
TTCAGCAGGGAAGGCTAATTGCTTCATTGGTTATTCCAAGTTAAAG230.11440509351372861No Hit
ACCCCAGCCATAACACAGTATCAAACTCCACTATTTGTCTGATCCG230.11440509351372861No Hit
GCACCGGGGAATTGAAGTGTCTTTCCCAATTCAGATCTAGTACCAA230.11440509351372861No Hit
GCGCATGGGGATACATCAACATGATTTATCACAATTATCTCATCAA230.11440509351372861No Hit
GTCTGCGGGGAAGCCCAAAAAAGCAAACTCAAGAAATTGAAATCCA230.11440509351372861No Hit
ATCGTTGGGGTGTGGGAAGCACTGTTTACAGTAACCCTTACCAAGA230.11440509351372861No Hit
ACTATAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA230.11440509351372861No Hit
AAGACTGGGTTGAATGGGGAAGGGTGACATTGAAAAGCTTTTCTTA230.11440509351372861No Hit
AGCTCAGGGATCCTGTCTTCCCTTCTCTCTCAAGGAAAATATCCCT230.11440509351372861No Hit
TCGCATGGGACATCACCCAGACGAGAAGAAAAAAGAATGTCACGGA230.11440509351372861No Hit
TTGAGTGGGGAAGATGTCCTCCAAGACATCGCTGATGACAACAGCT230.11440509351372861No Hit
CAGCTGGGGATGTTCGAACAATCCTATAGAGACCAGGCAGTGGAAT230.11440509351372861No Hit
GTGCCTGGGGTGCCTGAGTCGTCCGCTCGAAAATGGCGGAATACTT220.10943095901313173No Hit
TTGCTAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT220.10943095901313173No Hit
TTAAAGGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC220.10943095901313173No Hit
GAAAATGGGAGGTCTCAGAAAAACGAAATATAGGCTTACGGTAGGT220.10943095901313173No Hit
TAGAACGGGAGATACAACAGAACTTACAGTGGCATCAGTGGAGGGG220.10943095901313173No Hit
GCATAAGGGGCCGTTTCCAGTTACCAAGGCACGAGGATCCGGTGTT220.10943095901313173No Hit
GTCACGTGGGGAGAGAGCTGTTCCCCCAACAGCTGGAGCAATTCTT220.10943095901313173No Hit
CTTGAGCGGGTGCCTCTAAGATGATGCTCTGCTCTGCTAAAAGGAA220.10943095901313173No Hit
TTGCATGGGACTGGCCTGACAAAAAATCCAACGAGATGATCAAGAA220.10943095901313173No Hit
ATCTAAGGGATTGCTAAGATGGCAGTTGGGTTCTGAAGCAGCTGAC220.10943095901313173No Hit
AGCTTCGGGGTGGAGGGGGTGAAGAGAGTGTTGTCAGGAAGCTAAG220.10943095901313173No Hit
ACTGCAGGGGACTGCATCCTCCTCGACTTCTTTGATGACCACGATA220.10943095901313173No Hit
TAACGCGGGGAAGAAAGATTAGCTGCATCCATTCCACTGACACATC220.10943095901313173No Hit
CAGCAAGGGACTGAAGCCCCACTTCCACAAGGATTGGCAGCAGCGA220.10943095901313173No Hit
GCAAAAGGGGATATCCTCTAGCTCCTAGGTGAGGTGTCCTAATATC220.10943095901313173No Hit
AATACCGGGATGTGTAACTTGATATTGTTAGGATTCTCCTTGAAGG220.10943095901313173No Hit
TCGCTTGGGGGAGATGTCATGGCTTCCTTCTAGGCTGCGGGAGGAA220.10943095901313173No Hit
TTACGGGGGATCTGGTGGAGATCCAGTGTCCTGAGCAAGTGGTGGG220.10943095901313173No Hit
GTTTTGGGGTATGCCACAACTAGATACATCAACATGATTTATCACA220.10943095901313173No Hit
TATTAGAGGGATGACCCACCAAACTCATGCATATCACATAGTTAAT220.10943095901313173No Hit
TTTCCTGGGTATGAATGAATGAGTTTGTCTCTAGAAATCCAACTCT220.10943095901313173No Hit
TCTACGGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA220.10943095901313173No Hit
CCAGGCGGGGCGCTGGCTGCTCTGCAGGCCATGAAGGCGCATCCAC220.10943095901313173No Hit
TTGCACGGGGGCGCCAGACGTTCTCGCCCAGAGTCGCCGCGGTTTC210.10445682451253482No Hit
ATGCATGGGATTGCTACAGTCTGTGGCAGTTTCAGAAGAGGCGCAG210.10445682451253482No Hit
TGCTATGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC210.10445682451253482No Hit
CGCACAGGGACTTCGACGGAACCCTGTACAACAAGGGGTTCAAGGG210.10445682451253482No Hit
ACTCTAGGGGGGGGAATTCGAGCTCTTTCGACGTTTTGAAGGAGGG210.10445682451253482No Hit
TAAATAGGGATAGCGCTGCTTGTTCCAGTCATCTTCATGGGCTGCC210.10445682451253482No Hit
TCACTAGGGAGCCACAATGGACATCGCCATCCACCACCCCTGGATC210.10445682451253482No Hit
AAAGTAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA210.10445682451253482No Hit
CCCTCTGGGATCCTAGTAACATTGCTGTTACTTATACCTGCTGCTG210.10445682451253482No Hit
TATTCAGGGGGCTCTGAGCAAATGGCTGCTCTTCGCATGCTGTGGA210.10445682451253482No Hit
TATGCAGGGACTGCCCTCCCCAGTATAGTGTATATGGCCTACAGCA210.10445682451253482No Hit
GGTCGTGGGAATTTCTTTCCTTGTTTACGTAAATTTCGAAAGATCG210.10445682451253482No Hit
CACGCCGGGTCTTAACTGCTGCCGCGATGCCGAAGGGTCCCAAGCA210.10445682451253482No Hit
CACAAGGGGGTTGTCAGGATCATCTCACTCCCTTCTCCTTGATAAC210.10445682451253482No Hit
CAACGTGGGAACCTTTCGGAGAGTTGACCTTTGAATTGTTGACTGT210.10445682451253482No Hit
AGCAACGGGATCAAGTATAAGAGTTGGTACTCCTGGCTCATCAACA210.10445682451253482No Hit
ATTACCGGGGTGTACTAGCAATGGCTACACTGTACAGTAGGAAAGA210.10445682451253482No Hit
CTATCGGGGGAGTTCCCCTACCAATACCACACCCATTAATTAATTT210.10445682451253482No Hit
AACGACGGGGTGGAAACTTCAGTCATCTGATCTGAGAGTTAGAAAC210.10445682451253482No Hit
TGTCGCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA210.10445682451253482No Hit
TGTTAAGGGGTATTTTCTATCCAAAGAAATATATGTGATTACCCCA210.10445682451253482No Hit
CATAGTGGGTATGCAAGGGATTCCTGTTTATCACTATCCCCACCCC210.10445682451253482No Hit
TACCTGGGGCCAGAGGCTAGTGTCACTTAAAAAAAAAATCACCGCT210.10445682451253482No Hit
TTCTATGGGACAACCAGGTTGTGAAGGACAAAGGAGATCTTGAGTT210.10445682451253482No Hit
CACGCTGGGGTTAACCCTAAGCTGGAGCTAGCCCTGAGGGCTGGGG210.10445682451253482No Hit
TTCTTAGGGCGCTCTTCCGACCTCAGAAAGGGATCCTATAAGATTT210.10445682451253482No Hit
TTGTGCGGGATGTTGTGAGCATGTAGAAACAGTAATGCTAATGCAT210.10445682451253482No Hit
TTACACGGGATGCCACAACTAGATACATCAACATGATTTATCACAA210.10445682451253482No Hit
TGATTAGTTTCATATTTCCCAATTGTTTATCTCTTGTTTGGAGTTG210.10445682451253482No Hit
TTTACTGGGGGAGCCCAAGACAGCGTGGCGACTAGACTGTGCCCAG210.10445682451253482No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)