FastQCFastQC Report
Sat 31 Dec 2022
SRR5843292.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843292.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19937
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCACAGGGCAACCGACAGCTGGAGGCATTGGAGAATGACAACTTC400.20063199077092844No Hit
CTGTCAGGACCCTGGCTTGGGACAGTAAGAGGGTGTCAGGACCCTG300.1504739930781963No Hit
ATCAATGGGCAGCGTGGTGGTTGGTGTAGGGAGGCAGAGGCATCAC290.1454581933089231No Hit
CTCAGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC290.1454581933089231No Hit
TCGTCCCGGGAACTACCGATTTGCACACACCAACATTGAGTCTCTG290.1454581933089231No Hit
CGGTTTGGGGGCTTTCTAGGCTTTATTGTATGAGCCCACCACATAT290.1454581933089231No Hit
GGTACGAGGATCCACAGAAGTTGATGCAAGGCTTTCCTTTGATAAG290.1454581933089231No Hit
GCTCACGGGGTCATCTGTGCAGTACAATCACACCATCTGCATTGGC280.14044239353964988No Hit
CTGCGCGGGTCCACTTGCTTGGAAGGAGCCATTGGAAGAGCAAATT270.1354265937703767No Hit
CATATGGGGGCTTTATAGAGAAAGTGATCCAGCAAATGTGGGGCAT260.13041079400110347No Hit
ATGAAAGGGAAGATCATCCAACTTTTGGATGATTATCCAAAATGCT250.12539499423183026No Hit
CATTCGGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC250.12539499423183026No Hit
TCGCAAGGGGGGGGCAGACTGTGGACGACCCCTACACCACTTTTGT250.12539499423183026No Hit
ATAACTGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAAC250.12539499423183026No Hit
ATTTCGGGGAGGTGTTGGCTGTGACCTTCAATGACACGAGCGATCA250.12539499423183026No Hit
AGCTCGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC240.12037919446255706No Hit
CCACTAGGGGGCCCTTGACGGGCAGGCCGGCTGGGCTCTGCATCCC240.12037919446255706No Hit
GTCAATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC240.12037919446255706No Hit
CTGAGGGATGCCACAACTAGATACATCAACATGATTTATCACAATT240.12037919446255706No Hit
CTTGAGGGGCATGCCACGGTGTCCACTTGATAGGATGGTTTCTGTG240.12037919446255706No Hit
TGCTTTGGGACACAGATATAGTCTATATCTTCACGTTCGTGCTTCA240.12037919446255706No Hit
AGAACAGGGATAAATCAAGAGAGGTGTGTCAATGAGTCCTACAAGA240.12037919446255706No Hit
AGAAGAGGGGTGCCCGGGAGCAGCAGTGAGGACAAAGGTAGCCTCC240.12037919446255706No Hit
CATAGTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC240.12037919446255706No Hit
TAAGAGGGGCTGCTTGGCATGGGATGAAATGGGAACACATGTGGCC230.11536339469328384No Hit
TGTATAGGGAGGAGAGGACCCAGGCAAAATCTCGGAGTCCAGGATT230.11536339469328384No Hit
CTCTCTTCGGGGCAATAATGTCTATTGGCTTTCTAGGCTTTATTGT230.11536339469328384No Hit
AGATATGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT230.11536339469328384No Hit
ATCCGGGGGGAAGATAAACTCATTCACTTTTCTGGGGTTGCCCTTG230.11536339469328384No Hit
CTGGGGGGCACAGGTCTCCAGGGCTTCTTGGTTTTCCACAGCTTTG220.11034759492401063No Hit
GTCTCAGGGCTATGAATTGATGAGGTGGGACTTTGTTTTTTCATTT220.11034759492401063No Hit
TAAGATGGGACCATTTACCACACAACAGGCAAGGACTTTCATGGCC220.11034759492401063No Hit
CCTGCCATGGCTCCCAATTATCCTGGATGACAGGATTGCACCTGAG220.11034759492401063No Hit
AACTCTGGGATTCACTTGGAGAAGACAAACAAACTAGAGTTTGAGG220.11034759492401063No Hit
TCAATAGGGTATCATTAGATTTAATGTTCCAGTAATGAGCCAACTG220.11034759492401063No Hit
TTATAAGGGGGTCAGTGTCTCCCTCTCCACCCCACTGACTGTAGCC220.11034759492401063No Hit
GTTTTTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC210.10533179515473744No Hit
GTTAATGGGGCCTGCGAGGGGACTTAGAGCTCCATGGCCTGCCTTT210.10533179515473744No Hit
GAAACCGGGGTAGAAAACTCTGCCTAAGAGTTCCAACCTTTTCTTG210.10533179515473744No Hit
CTACGAGGGCAACACCTGAAGCAGCTGCCCAACCACAGAGTGCTGG210.10533179515473744No Hit
ACTTCGGGGGATAACAGCTACCATGACAACCTTGTGGTTTCCAAGG210.10533179515473744No Hit
ACGCTAGGGACAGACTAGAGTGGCCCTGGCCACACAGGTACCTCTG210.10533179515473744No Hit
CTGCCAGGGTGGCCGGGTTCATCCTGCTTCCTAAACTACAGACGCT210.10533179515473744No Hit
TAGTTAGGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAA210.10533179515473744No Hit
TTCCAGGGGAAAGGGAAACTTACACAATGTCCGGAGCCCTTGACGT210.10533179515473744No Hit
TCGAGCGGGTATGCCACAACTAGATACATCAACATGATTTATCACA210.10533179515473744No Hit
AAGTACGGGACCACTCACCCTTCGCCATCAGATGCCACCACGAGAG200.10031599538546422No Hit
GGACATGGGGATGGTGAATTGTTAATGAATTGATACCTCAGTAGAA200.10031599538546422No Hit
TGGCCTGGGGCTCCAGCTTCTCAGGGGGAGACAACCCTCATGTCCT200.10031599538546422No Hit
ATACACGGGGGAAGAGGCCTGGGTTGTAACAGGAACAGATGGCTGT200.10031599538546422No Hit
TTGTAAGGGAGGCCTGGACAGAGAGACCAGACCACAGGAGTCTCAG200.10031599538546422No Hit
CTCCCTACCTTAATCCCCCATTCTCTTGCTTTCAAAATACAAGCAC200.10031599538546422No Hit
GGTCCGTGCGGGGTGTTCTTTATTAATATCCTAACACTCCTCGTCC200.10031599538546422No Hit
GCTTAAGGGGCAATAATGTCTATTGGCTTTCTAGGCTTTATTGTAT200.10031599538546422No Hit
CTTCCTGGGGACAATGTGGGCTTCAATGTAAAGAACGTGTCGGTCA200.10031599538546422No Hit
TAGCCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC200.10031599538546422No Hit
ATAAAAGGGCTTCTTCTTCTTCGGGAGAACACCAAATGGCGGATGA200.10031599538546422No Hit
CAGTATGGGAAGACATCGGGAAACATCACACCGCACACGCTGTCGT200.10031599538546422No Hit
GTCTTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACAT200.10031599538546422No Hit
GAGCAAGGGACGCCTAAACGCAGGGATTTATTTCCTATTTTATACC200.10031599538546422No Hit
AAATCAGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA200.10031599538546422No Hit
CATCCAGGGCCAGCCTGGAGCGCATGGGTCCTGTGATGGATCGGAT200.10031599538546422No Hit
AGGCTGGGGTGGAGGTCAGAGGAAGTCCTCAGACCTAGAGTTGGAT200.10031599538546422No Hit
GTTTGTGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCTT200.10031599538546422No Hit
AGCTACGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA200.10031599538546422No Hit
TGGTTTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT200.10031599538546422No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)