FastQCFastQC Report
Sat 31 Dec 2022
SRR5843291.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843291.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18963
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCACAGGGCAACCGACAGCTGGAGGCATTGGAGAATGACAACTTC350.18456995201181248No Hit
GGCGCAGGGGGCTCCGAGAAGATGAGCATCCAGATTCTGGAGGACA290.1529293888097875No Hit
TTGTAAGGGAGGCCTGGACAGAGAGACCAGACCACAGGAGTCTCAG280.14765596160944996No Hit
GCCACAGGGGGTTCCCAACTGCGGAGCCCAATCGCGTCAGGCTCCG270.14238253440911247No Hit
CAGTAGGGGACCGCTGGAGGCTTCTGCTGACGGCGTCGGACCTGCG260.13710910720877498No Hit
ATGTCAGGGGTGTTATGAGGAGTTTGGTGCTTGGGAATTGAGCTCC260.13710910720877498No Hit
TTACTAAGGGATTCCCTCATTTGTCTGCCTCAGCTTCCCCGCACTG260.13710910720877498No Hit
TCGCTTGGGACCTGCGCGCCGAGCAGAAAGAGCAGAGGCACACTCT250.13183568000843748No Hit
CGTCTTGGGGAGGGGAAGCAGCTTTTCTGAAGAATGAAAAAATAAA240.1265622528081No Hit
GTTCCCGGGCCAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGC240.1265622528081No Hit
GTCTCAGGGCTATGAATTGATGAGGTGGGACTTTGTTTTTTCATTT230.1212888256077625No Hit
TAACAAGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGC230.1212888256077625No Hit
AAGCTAGGGAGAGTTGAGCATCTGTTTGCCTGAAGTGAATTTCCAG230.1212888256077625No Hit
AACTATGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAGCA230.1212888256077625No Hit
AGAAGAGGGGTGCCCGGGAGCAGCAGTGAGGACAAAGGTAGCCTCC230.1212888256077625No Hit
AAGTACGGGACCACTCACCCTTCGCCATCAGATGCCACCACGAGAG220.116015398407425No Hit
TAAGATGGGACCATTTACCACACAACAGGCAAGGACTTTCATGGCC220.116015398407425No Hit
CAAACCGGGCACCATTGTTCCAGCTCCTCTTCCCTCCCTGTCATCC220.116015398407425No Hit
AGCTCGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC210.11074197120708748No Hit
TGTATAGGGAGGAGAGGACCCAGGCAAAATCTCGGAGTCCAGGATT210.11074197120708748No Hit
TTAATAGGGGGAGATGACAAGTACTCTCTGGCCCGGAAGGAGGTGC210.11074197120708748No Hit
ACGCTAGGGACAGACTAGAGTGGCCCTGGCCACACAGGTACCTCTG210.11074197120708748No Hit
CCTGGTGGGGATTTCATCTGCCTTTTCTTATTTTAAGGAATGGGTG210.11074197120708748No Hit
TGTTCTGGGGTGTTTTCAAAGTGCTTTTCTCTATTGCCACACTCTC210.11074197120708748No Hit
TCGCAAGGGGGGGGCAGACTGTGGACGACCCCTACACCACTTTTGT210.11074197120708748No Hit
ACGTGGGGCGATCTGTGCTCGGGGGAATTCGCCCTAAGTTCCGGTC210.11074197120708748No Hit
TGATCTGGGCTGGGATCAAGAAGGTGTTGAAATCGGTTTCCTGTGG210.11074197120708748No Hit
AGGCTGGGGTGGAGGTCAGAGGAAGTCCTCAGACCTAGAGTTGGAT210.11074197120708748No Hit
TTGTGCGGGAATATGATTTCACTATAATTCAATTACACTATTAACC210.11074197120708748No Hit
TTGCATGGGGGAGAAAATTTGTGTTTTTGAAATGTCCATGCCATCC200.10546854400674999No Hit
ATACCAGGGGTTGTTCATGAAGAAGTAGAAGCATCGAAAGGTTGGA200.10546854400674999No Hit
CCATCAGGGTAGCATTCCCACGAATAAATAATATAAGTTTTTGACT200.10546854400674999No Hit
TCGACGTGGGGGAGCCAAAGATGGAGCTCAGACGACCCTAGCGAAG200.10546854400674999No Hit
AATCTTGGGAGAAGATGAACGCAGTGACAGAGAAGAAACAGAGAGT200.10546854400674999No Hit
GCTTCAGGGAAGAAGATGGAGGTCAAGGCCATCTTCACGGGGTACT200.10546854400674999No Hit
CTCAGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC200.10546854400674999No Hit
CGCCTGGGAATCAATTCCTAAAATTAGCCCCTTTTTTGAGAACACC200.10546854400674999No Hit
GCTAACGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA200.10546854400674999No Hit
GTAGCTGGGATGTCACTGCCATTCGGAATCAGCAGGAAGGCGTGTG200.10546854400674999No Hit
AGCAATGGGACCGATGGGACCCGGACAAGACTGGAGATAAACCTCG200.10546854400674999No Hit
TCGAGCGGGTATGCCACAACTAGATACATCAACATGATTTATCACA200.10546854400674999No Hit
CGTTGTGGGATTATAGAATGGCTAGCAGCACCCCTCACCTCCACCG200.10546854400674999No Hit
CAAAATGGGGCATCTGTTCTGATTCTTTGGGCACCCAGAAGTTTAT190.1001951168064125No Hit
CTACAAGGGCACTTGGTTCACTGGAACACCAAATATGGGGACTTTG190.1001951168064125No Hit
GCGTTCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC190.1001951168064125No Hit
TTGCGCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAAT190.1001951168064125No Hit
GCCGACGGGAGTTTCTAGAACCCACATGGTGGCTCACAACCATACC190.1001951168064125No Hit
GGTTAAGGGATTACATCATAATGCAACTGTTACCATATTCGTAACT190.1001951168064125No Hit
CTGCCAGGGTGGCCGGGTTCATCCTGCTTCCTAAACTACAGACGCT190.1001951168064125No Hit
ACCTATGGGAGCGTTAAAGGTGCGCTATCCAGAGCGCATCACAATA190.1001951168064125No Hit
GGCTTCGGGACAGTGCCTGTATAGACAAAGCGGGGCGGAGGGGGGG190.1001951168064125No Hit
TTGCGGGGATGCCACAACTAGATACATCAACATGATTTATCACAAT190.1001951168064125No Hit
CCTACTGGGGACCAGCCTTGCTCTCTAAGCTTGTCAGAGCCAGCCT190.1001951168064125No Hit
GTTCCAGGGATAGACAAAGCGGGGCGGAGGGGGGGGGCATCATCTG190.1001951168064125No Hit
TACACGGGGGTCTGTGAAAATCCTTTGACCTTCTAACATTGCAGGC190.1001951168064125No Hit
GTAGCTGGGCCCAGCATGATTACACGGCCACTGACACTGATGAGCT190.1001951168064125No Hit
CATAGTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC190.1001951168064125No Hit
CTCAAGGGGGTATTGAATGTCAATCAATTCATTGTACTTTGGTGTC190.1001951168064125No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)