FastQCFastQC Report
Sat 31 Dec 2022
SRR5843290.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843290.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28778
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCACACCCTGAGTGCAGGAACTGGGGAGGGTCCTGCTGGTGGG430.14941969560080617No Hit
TTGACGGGGGAGTTCTCACTTCCTTCTTGAGCCCAGAGCCGCCGCC390.13552018903328933No Hit
TCACTCGGGAGCGCTTCTCTGACCTTTTTCTGAGTAGAACTCAAGG360.12509555910765166No Hit
CTACCGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA350.12162068246577246No Hit
CGCCGAGGGGATGTTCTGAGCCCCTGGGCCTGAAGAATAACACAAT340.11814580582389325No Hit
ATTCACGGGATAGTGGGGAGAGTGACAGTGAGGAGGAACAGGAGCG310.10772117589825561No Hit
GGGTTCTTCTTCTTCGGGAAAACACCAAATGGCGGATGACGCCGGT310.10772117589825561No Hit
TCAAAGGGGAAGTTAGGCAGCCTTGGGACAGAGGAGAGGGTCTCTG300.10424629925637639No Hit
AACCCACCTCTCAATGGGGCCCGGATCGCAGCAACCATCCTGACTT300.10424629925637639No Hit
GCTCATGTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAG300.10424629925637639No Hit
TTCGTAGGGAGCCCCTCCAGGTGTACCAGGCACCCCTCAGCCTGGC300.10424629925637639No Hit
CGTACTGGGAGGCTACCCGGATCGATGACGCGAATTGGGGACATTC300.10424629925637639No Hit
TTGCGCGGGGAACTTGTGGTTCCTGAAACATCAGATAATAGTCGGA300.10424629925637639No Hit
TTCATAGGGATTTGGGGACTTTTGGAGAATGATATGGGAGCAACGA290.10077142261449719No Hit
TTTGCTGGGGGAGGAAGAGGCTGAGCCTTTGAGCAAAGGGGAACCA290.10077142261449719No Hit
AGCTTTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT290.10077142261449719No Hit
CTATGCGGGCAGTAGAAAAAGTCGCCAGAAGACAAGAGCTGTAGGG290.10077142261449719No Hit
CAGTCAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC290.10077142261449719No Hit
CTCATGGGGGTTATGAACAGGCCCAGCAGCATTTCATGGGACGGCC290.10077142261449719No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)