FastQCFastQC Report
Sat 31 Dec 2022
SRR5843289.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843289.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27567
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGCCGGATGGTCAGGGCTCCCCAACCTGAGTTGGGCTACTTCCA400.14510102658976312No Hit
TCACTCGGGAGCGCTTCTCTGACCTTTTTCTGAGTAGAACTCAAGG340.12333587260129866No Hit
CCACCACACCCTGAGTGCAGGAACTGGGGAGGGTCCTGCTGGTGGG330.11970834693655458No Hit
TATCCTGGGGGCTCCATTCCTGCATTCTGCCATAGGAATCACAACT320.1160808212718105No Hit
GCTCAAGGGATCCAGATGCCTCCAACAAGAAGCAGACCATCCACTA320.1160808212718105No Hit
ATTGATGGGACTCAGAGGCAGCAAGGCTGTCTCTGTACCTCCACTA320.1160808212718105No Hit
CTCATGGGGGTTATGAACAGGCCCAGCAGCATTTCATGGGACGGCC320.1160808212718105No Hit
GACATCGGGGGCTCTGAGGTTAAGGGAACCCTTTCCTCTTGCAGAG310.11245329560706642No Hit
TTCTGCGGGATTGCATCATTAATATGTCAGATAGTTGCTTGTCAAG300.10882576994232233No Hit
CTGCTCTAGGGAGAGCCAGGAACATCAGGTAACTTGTAACAGATTA300.10882576994232233No Hit
TCTTGTGGGGAAATGCTTCATTAAATACTTTTGTGTCTCATGCTTC300.10882576994232233No Hit
CACAGAGGGAGACTGGAAGCGAGGCTGTGCTGCTGGGATGCCAGCT300.10882576994232233No Hit
TCATGGGGATGGCCAAATGCAGCCTGTTCCTTTTCCCCCTGATGCC290.10519824427757825No Hit
CATCCAGGGATGAAAAGCAAGCCGGGGGCCGCCATGGTGGAAATGG290.10519824427757825No Hit
CGACAGGGGTTCCGCATTCTGCAAGCCTCCGGAGCGCACGTCGGCA290.10519824427757825No Hit
CTACTAGGGACAAGGAAAGTGCCTGGGAGGCTCACCTGGGAGACAC280.10157071861283419No Hit
CGCCGAGGGGATGTTCTGAGCCCCTGGGCCTGAAGAATAACACAAT280.10157071861283419No Hit
AGCCATGGGACAGTAGTCGTTGCCGGTCGCGGGTGTCCGGGCGCGA280.10157071861283419No Hit
AAACGGGATGGACGACCTGCAGTGCTTTATCGGACTAGCTATGATA280.10157071861283419No Hit
ATCCACGGGGTGAAACCAGCCTTTGAGGAGTTCTGCCTGCCGACTA280.10157071861283419No Hit
ATCATTGGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTT280.10157071861283419No Hit
GATCTTACGGTGGGAATGTGGAGCAGCAAGAGGCTGAGCCCTCGTC280.10157071861283419No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)