FastQCFastQC Report
Sat 31 Dec 2022
SRR5843288.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843288.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27325
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTACTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT400.1463860933211345No Hit
TATTGTGGGGACAGTTTCGGGACCCCGGCCCTTCCAGACGTTCGTG340.12442817932296432No Hit
TTCGTAGGGCTGCTCTTAAACTGCTTCTCTGCTCTGAGAAGCCCAG340.12442817932296432No Hit
TAGATAGGGAGAATGAGGAATGACAAGTTGAAGTCTGAGAGAAGCA320.11710887465690759No Hit
GCTTTTGGGACTCCCTCCAGACGGGGCCAAGTCTGGTCTGAAGGAG310.11344922232387922No Hit
GCACCTGGGATGAGAACGTGAGGCACAAATGGCACCCAGAGGTTTG300.10978956999085088No Hit
CACAGTGGGGACCACTTTTCTTTCAGAGTTTAAAGAAAATGGACTC300.10978956999085088No Hit
ACACTACGGGGACAAGGTGATTATAACTCAGGCACTTTTAGCTATT300.10978956999085088No Hit
CATTTAGGGAACATCTCAGGCACAGACATAGCCAAAAGTCCATACA300.10978956999085088No Hit
TAGTTAGGGGGCTCTCTGCTCCTCCTGTTCGACAGTCAGCCGCATC300.10978956999085088No Hit
ATAAACGGGAAGGAAGGTCAAAGCAAGAAGATGAGTCGAAGCCATG290.10612991765782251No Hit
AGCAATGGGGGGACGGTTTTTTCCTACTTTTGAGTTACTGGTGATG290.10612991765782251No Hit
TCACATGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT290.10612991765782251No Hit
TTGACAGGGACCCCATCATGAACCTGCACGAGCGGACTCTCAGTGT290.10612991765782251No Hit
GTGTTGGGGACCATACCACTTCCTAACTCCTGTAAGGATGAGCCCA280.10247026532479414No Hit
TATACCGGGGTGAAGCAGTTCTATGACCAGGCCCTTCAGCAAGCTG280.10247026532479414No Hit
AAAAGCGGGACGGCAATTAGGGAGCACAGTGCCTGTATAGACAAAG280.10247026532479414No Hit
TACATAGGGGGAAGTGGTCTTTATAGCGTGTGCCCAGGCTCAGACA280.10247026532479414No Hit
CATATAGGGGCCCATAGACCATCATGTCACCTGTCTTGGGTTTGAA280.10247026532479414No Hit
GTCTCCGGGGAACTCCAAACCCTTCTTGCTCAGAGCTGCAGATGCT280.10247026532479414No Hit
CTCTAGGGGACCACTGCTGTGGGTGGACACAGCAACATGCCTTCCA280.10247026532479414No Hit
TTGTGCGGGGGGACTCAGCCGAGGGTGCCCCCTTCCCAGGAAGGGC280.10247026532479414No Hit
CAGCGAGGGAATGTAATTTTTTTTTTAAATTTACTTTCGTCAACCT280.10247026532479414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)