FastQCFastQC Report
Sat 31 Dec 2022
SRR5843287.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843287.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26513
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTCTCGGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGC330.12446724248481877No Hit
TGTACTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT320.12069550786406669No Hit
GTCTCCGGGGAACTCCAAACCCTTCTTGCTCAGAGCTGCAGATGCT310.11692377324331461No Hit
TCGTCCGGGGTTGTATTTTTTAAGTTGAAATTAATGAAGTTAACAT300.11315203862256251No Hit
TCTTTCGGGGAAGAAGAAAAGAGATAGAACGCCAGAAACTCCTCTC300.11315203862256251No Hit
TAGCCCTGGGGTTGCCATCGAGAATCCTGCTGACGTCAGCGTCATC300.11315203862256251No Hit
CTCCCTGGGCGCCATCTCCCTGTCCAGGACAGAGGCCCTCAACCAC290.10938030400181042No Hit
CACAGAGGGACAAACTGGTGCTGGAAAGTAAGTAGGCAAGCTGTTG290.10938030400181042No Hit
TTCTGCGGGAGTGTCCCGGCGCAGCTATGAACACTGGGAATACCTG280.10560856938105834No Hit
AACATAGGGTAGCCTATCGCAGACGGTATCAACAGGAACATCCTCG280.10560856938105834No Hit
TATGTAGGGAGACATCGATGAGTGTGGTACAGAGCAAGCCACCTGT280.10560856938105834No Hit
CATAATGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA280.10560856938105834No Hit
CTTGATGGGGTCGCATAAATTTTAAACACCAAAAATATTTGTTTTG280.10560856938105834No Hit
TTAAGGCGGGGGACCACAAACTGAAACCTTTCATTCCTGATTTTAT280.10560856938105834No Hit
TTACATGGGGAGGCCAAGGGGGAGGTCGCCCCCAAGGAGACCCCCA270.10183683476030626No Hit
CCCAAAAGGGGTGTTCGCAGCCTTCGCCGCGCCGCTGCCGCTCTCC270.10183683476030626No Hit
CATTATGGGGGACACCTCCTGGGAGGAAAATGCTCCCTGTCTGCCA270.10183683476030626No Hit
AAACGCGGGATGATATCTGTCGTAGAAACCTCGACATTGAGCGCCC270.10183683476030626No Hit
AACCTAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT270.10183683476030626No Hit
CGTGTTGGGGTCTCCAGCAGCCGAGCAAGATGCCCAAAGGGAAGAA270.10183683476030626No Hit

[OK]Adapter Content

Adapter graph