FastQCFastQC Report
Sat 31 Dec 2022
SRR5843284.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843284.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37277
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAAATGGGGAGACCGCGCTGGGTTGCCGCTGCCGCTGCCGCCATC530.14217882340317084No Hit
ATATACGGGGAGGACTGCAGAAAACAAGCTAAGTAATCGTTTCTTC410.10998739168924537No Hit
TTCTCCGGGGGGGTGCAAGCAGGCATTCCCATGCCCTGCTTCACTA400.1073047723797516No Hit
GTATGAGGGATGATTCCTTGTGAGAAGGTGTCCAGCCTGCCCACGG390.1046221530702578No Hit
CTCTATGGGGCTGCAAACACTGGAATGACCCACTTCCAAGGCATAA380.10193953376076402No Hit
TGCTTTGGGGTTTTTAAAGCTGCAATGCTTCCAGGAGCAAGAAAGC380.10193953376076402No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)