FastQCFastQC Report
Sat 31 Dec 2022
SRR5843282.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843282.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32152
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCCATGAGGCCAGTGGCTTGGATGAGCAGGGAGAAGCCAGAGAA390.1212988305548644No Hit
ATAATAGGGAACCCTGCTGATGCTCCCAATCCGGTGGTATTTGTGG390.1212988305548644No Hit
TTTTGCGGGGTACCCAGGTGGCCACAGCAAGTGATACGACCCTCCG380.1181886041303807No Hit
CCCTGTGGAAATTCGAGACCAGCAAATACTATGTGACCATCATTGA370.11507837770589699No Hit
TTAATAGGGGGCATCGGACACTAGCATCACCTGGAACAACCTGAAA370.11507837770589699No Hit
AGTAGTGGGGGGGGGCTACGGGATCATGGGGCTTCTGACCATTCTG360.1119681512814133No Hit
TGCATAGGGGAGCACGTGATTTTCCCCGGTGCTGGCGACGAGGCGA360.1119681512814133No Hit
CTTTCCGGGATTCTCTTTGATGCACAAAACCAAGAACTCACTCTTA360.1119681512814133No Hit
TAAGCCGGGAAGAAATGACAGCTACACTCTGCATAAGATCTTACCT340.10574769843244589No Hit
AAGAATGGGATTGGGCGCCTGGTCACCAGGGCTGCCATTTGCAGTG340.10574769843244589No Hit
ACATAAGGGGGAATAGTAGTGGCCCCTGGCTGAAGGAGCTGACCAT340.10574769843244589No Hit
TCGAGCCGGGAAATTAGTCATTGCTTAAACACAGTTCATGCAGATT340.10574769843244589No Hit
GAACCAGGGGGCAAGATGGCGGTGCAGATTTCCAAGAAGAGGAAGT340.10574769843244589No Hit
GTTGCGGGGGCCGAGTGAGCCGGGCGGAAGAGGCACTGGCCCACAT330.10263747200796218No Hit
AACTTTGGACAGATAGTGGAGAGCTAGTTGCTAATAATGTCTTGTT330.10263747200796218No Hit
CCCTTTGGGGGACGCGACCTCGGGGGCAGTCATGGCGGCTCGGTGT330.10263747200796218No Hit
CGCAACGGGATGATGAAGAGGAGCAAGGCTATGACAGTGAGAAGGA330.10263747200796218No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)