FastQCFastQC Report
Sat 31 Dec 2022
SRR5843278.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843278.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47275
Sequences flagged as poor quality0
Sequence length46
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCTGGCCATGCCTGTCCCATCAAGTATAGCCCAGAAGAGATCG690.14595452141723955No Hit
CGAATAGGGGTACTAGGAGTGCTGAGCTCTGGCTGGTAGTGGACGT620.13114754098360656No Hit
CCATAAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT560.11845584346906399No Hit
TCGCTAGGGCTAGATAGGGGAGAAGAAACAGGATGGGGACAGTTGC550.11634056054997356No Hit
CACCATGGGATTGACAAATCAGTAGAACTCACAAATCACATAGAAT550.11634056054997356No Hit
TTTCTCGGGGGAGCTTAGAGCTGCAAGGCAATCTCATCGTGGTTGG540.11422527763088314No Hit
GCAGTTCAGAGGGACCCCAGGGCGAGGCAGTTCTCCTTCCTCATCT540.11422527763088314No Hit
CTGTTAGGGGCTAGTCACCATCCTGATTTTCATGGACCAGCAGATC530.1121099947117927No Hit
TCAGTTGGGGTTCAGCAGAACTGAGATGGTATAGGCAGGCAGAGAA530.1121099947117927No Hit
TCGCAGGGGGTGGGGATGTGATGCGGGCCCTGGGCCAGAACCCTAC530.1121099947117927No Hit
TACCAAGGGAAGAGAGAGGCCAGGAGAAGTGTGCCCAGTACTGGCC530.1121099947117927No Hit
GGTCTTGGGGCTATCACTTGTGTTTGCATATGCTGCACCTGTGAGT530.1121099947117927No Hit
GTTCTGGGAGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCA520.10999471179270227No Hit
ACACTTGGGGTTTTCTCACTAGTACTTCTAGCTAGTCTCTAGGAGT520.10999471179270227No Hit
CAGCGGGAGTGGTGTATTGTAGAATAGTCAGTCCATCAAGAGCTGT520.10999471179270227No Hit
TTTTTTGGGAATACAGTTTGCCATGTTGTGGTGACCCCCAACCATA510.10787942887361185No Hit
GAGTCAGGGGAAAAATTACAAGAGAAACTGCTCCCATGGTTGATTT510.10787942887361185No Hit
TTTAGTGGGTAAAATGTCTGTCATGAAAGCCTGATGCTCCGAGTTC510.10787942887361185No Hit
TCCAATGGGCGCCCACTTCCTCCACCATTTGTTCCAGGCATGCATC510.10787942887361185No Hit
TATACCGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACTT510.10787942887361185No Hit
AAATGGGGGACCCATGGGGCACAGCATGGTCATGCCTGCTAGAAAG500.10576414595452141No Hit
GCTGCTGGGACTCCAGTATGTATACACTGGACCACTAAGCCATCTC490.10364886303543099No Hit
CTCGCTGGGTCTAGAGAAGCAGTTTTCAAGCCTGGCCAGCTTGCAC490.10364886303543099No Hit
CTTAATGGGGAAGCTGGACAGCTTACAACAAACTTGTGTTCATTTC480.10153358011634056No Hit
CGTTTTGGGGTATTTAGCTGACTTGCAACCCTACACGGAGGTAATA480.10153358011634056No Hit
CTTACACCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT480.10153358011634056No Hit
AAGATGGGGCCCAGCAGCACATGGCTGCGGACCGCACCGGGAGTCA480.10153358011634056No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)