FastQCFastQC Report
Sat 31 Dec 2022
SRR5843277.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843277.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45186
Sequences flagged as poor quality0
Sequence length46
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCTGGCCATGCCTGTCCCATCAAGTATAGCCCAGAAGAGATCG800.17704598769530386No Hit
CGAATAGGGGTACTAGGAGTGCTGAGCTCTGGCTGGTAGTGGACGT600.1327844907714779No Hit
TTTAGTGGGTAAAATGTCTGTCATGAAAGCCTGATGCTCCGAGTTC590.1305714159252866No Hit
CCATAAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT580.1283583410790953No Hit
CTTACAGGGCAGCAGTGAGCTGGCCCTGCTGGCTGATGAGCTCATC560.1239321913867127No Hit
ACTAGTGGGGAACCCCAAGATCCGCTCCCAGAACCTCAAGGAATGT540.1195060416943301No Hit
TTTCTCGGGGGAGCTTAGAGCTGCAAGGCAATCTCATCGTGGTTGG530.1172929668481388No Hit
TCGCTAGGGCTAGATAGGGGAGAAGAAACAGGATGGGGACAGTTGC520.1150798920019475No Hit
ACAAGGGGACAAGCGCAAGCTGAAGCGGGTCCGAATCTCCCTGGCG510.1128668171557562No Hit
ACATGTGGGGGCAGATAAGAACCCTCCAGCTCGGGGCCTCAAACCG500.11065374230956491No Hit
AAGATGGGGCCCAGCAGCACATGGCTGCGGACCGCACCGGGAGTCA500.11065374230956491No Hit
ACTATTGGGAGCCTATCGCAGACGGTATCAACAGGAACATCCTCGT500.11065374230956491No Hit
TCAGTTGGGGTTCAGCAGAACTGAGATGGTATAGGCAGGCAGAGAA490.10844066746337361No Hit
CAAACTGGGACTACAATGGCTTGAAAGTTCTGAATATGGCAGCAGA480.10622759261718231No Hit
AAGTGGGGGGGCGTCTGTTCTGCACCAACTCAGAGTCTTGTTGGAG480.10622759261718231No Hit
TGGCTTGGGATCCCTCTGTTTACCATGAATCTGTTCATGATATCCA480.10622759261718231No Hit
CAGCAAGGTCTTCCAGGGCAACTTGGACAACAACTCCCACAAGAAG480.10622759261718231No Hit
TGGGAGGGGCGCTACGTGCGTGTCCTTCCAGTGTCCTGGCATAACC480.10622759261718231No Hit
TTACGTGGGAGCTGATTACTACCCGGAATACAAACTGCTTTTTGAG480.10622759261718231No Hit
GGTCTTGGGGCTATCACTTGTGTTTGCATATGCTGCACCTGTGAGT480.10622759261718231No Hit
CACAGGGATTGGAGGAATTCTCTCCCAACTGCCTAAATCCGATGAA470.10401451777099101No Hit
AGTTATGGGGAGGGTAGAAGACAGAAGAGGATGCTGTGTCCTCTTA470.10401451777099101No Hit
GCAGTTCAGAGGGACCCCAGGGCGAGGCAGTTCTCCTTCCTCATCT470.10401451777099101No Hit
CTGTTAGGGGCTAGTCACCATCCTGATTTTCATGGACCAGCAGATC460.10180144292479971No Hit
GACAATGGGGCTTGAAATTTTTATTTTGTTCTGTTTTAAAAATGTG460.10180144292479971No Hit
CTGAATGGGATCCTAACTCTGTCAGAAGACATCGTGGATGGGCATG460.10180144292479971No Hit
TAAGAAGGGGGGAGGAAGTGTGTTCACATACCCAGCATCCACGCAC460.10180144292479971No Hit
GTCGCAGGGGACGATAAGCAGAGCCAGCAAGAAATTGAGTTGCCAA460.10180144292479971No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)