FastQCFastQC Report
Sat 31 Dec 2022
SRR5843274.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843274.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62307
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGCTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA810.130001444460494No Hit
CGCTTAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT710.11395188341598857No Hit
CCTATGGGGGTTTGTGGTCAAGGCATACCTGCCTGTCAATGAGTCC710.11395188341598857No Hit
GCTTTAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA710.11395188341598857No Hit
AGTTACGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT670.1075320589981864No Hit
CTGTTTGGGGGAGTCAGTCACCTTGAGCAGGGAGTGTGCTGTGGGC650.10432214678928531No Hit
TGTGCAGGGATTACAAAGACTCTCAATAAAGGCATGTGCGCATCTC650.10432214678928531No Hit
GCACCTGGGTGGCCATGAACTTGGGCCTCCCAGACATGGTGGCCAA640.10271719068483476No Hit
CGCTAAGGGGGCAGGAGGCTCGGGTGACGTCAGGCGCGCCGCTGCG640.10271719068483476No Hit
CAATATGGGGCCTTTTGTGACTGGCGGTGAACGAGTGCGCAGTGCC640.10271719068483476No Hit
CATCTAGGGGCAGACATGGCGGCCCAGAAGGACCAGCAGAAGGATG630.10111223458038424No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)